[Home] | [Total List]

[188334_at]

Description H14N18.1 /REP_DB=WormBase Gene ID /WP=CE17973 /GEN=unc-23 /TR=O61980 /GB=AAC17781.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 68      4grp_highest_8_8 > 12      4grp_high_8_8 > 39      6grp_highest_nonorm > 85      6grp_total > 79      4grp_total > 32      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 885
1 2 3 4 range
A 462.9
(-3)
P 		684.8
(-1.1)
P 		956.3
(1.3)
P 		1155
(3)
P 		692
B 534.3
(-3)
P 		711
(-1.7)
P 		1347.7
(3)
P 		1046.9
(0.8)
P 		813
C 471.5
(-3)
P 		952.5
(0.6)
P 		1275.6
(3)
P 		863.4
(-0.1)
P 		804
avr 489.6
(-3) 		782.8
(-0.5) 		1193.2
(3) 		1021.8
(1.5) 		704

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 699
1 2 3 4 5 6 range
A 679.3
(-3)
P 		927
(1.2)
P 		704.1
(-2.5)
P 		677.1
(-3)
P 		849.9
(-0.1)
P 		1032.9
(3)
P 		356
B 730.1
(-2.2)
P 		885.2
(-0.1)
P 		774.4
(-1.6)
P 		674.3
(-3)
P 		764.1
(-1.8)
P 		1109.2
(3)
P 		435
C 775.7
(-0.5)
P 		865.8
(0.2)
P 		802.5
(-0.3)
P 		488.3
(-3)
P 		858.8
(0.2)
P 		1187.5
(3)
P 		699
avr 728.4
(-1.6) 		892.7
(0.4) 		760.3
(-1.2) 		613.2
(-3) 		824.3
(-0.4) 		1109.9
(3) 		497
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 168.5
(-1.8)
P 		148.6
(-3)
P 		250
(3)
P 		169.1
(-1.8)
P 		101
B 170.4
(-3)
P 		175.6
(-2.8)
P 		312.3
(3)
P 		223.1
(-0.8)
P 		142
C 156.1
(-2.8)
P 		273.9
(-0.4)
P 		444.6
(3)
P 		145.6
(-3)
P 		299
avr 165
(-3) 		199.4
(-1.8) 		335.6
(3) 		179.3
(-2.5) 		171

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 315
1 2 3 4 5 6 range
A 125.2
(-3)
P 		329.7
(3)
P 		153.3
(-2.2)
P 		171.7
(-1.6)
P 		256.5
(0.9)
P 		251.5
(0.7)
P 		205
B 254.1
(-1.1)
P 		294.6
(-0)
P 		188
(-2.8)
P 		178.6
(-3)
P 		310.4
(0.4)
P 		413.6
(3)
P 		235
C 287.5
(0.8)
P 		264.2
(0.3)
P 		204.3
(-0.9)
P 		98.2
(-3)
P 		277.9
(0.6)
P 		397.5
(3)
P 		299
avr 222.3
(-0.9) 		296.2
(1.3) 		181.9
(-2.1) 		149.5
(-3) 		281.6
(0.9) 		354.2
(3) 		205
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188334_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11938
Sequence Type Exemplar sequence
Representative Public ID H14N18.1 NCBI
Target Description H14N18.1 /REP_DB=WormBase Gene ID /WP=CE17973 /GEN=unc-23 /TR=O61980 /GB=AAC17781.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072906(11), NM_001028840(11), NM_182342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072906 NCBI Caenorhabditis elegans UNCoordinated family member (unc-23) (unc-23) mRNA, complete cds. 11/11 None
NM_001028840 NCBI Caenorhabditis elegans UNCoordinated family member (unc-23) (unc-23) mRNA, complete cds. 11/11 None
NM_182342 NCBI Caenorhabditis elegans UNCoordinated family member (unc-23) (unc-23) mRNA, complete cds. 11/11 None
H14N18.1a ENSEMBL cdna:known chromosome:CEL140:V:8938984:8942255:1 gene:H14N18.1 11/11 A 
H14N18.1c ENSEMBL cdna:known chromosome:CEL140:V:8939980:8941865:1 gene:H14N18.1 11/11 None
H14N18.1b ENSEMBL cdna:known chromosome:CEL140:V:8939990:8941865:1 gene:H14N18.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8939989-8941866(+) 99.2 99.2
Public Domain and Genome References
Ensembl H14N18.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17781 Uncoordinated protein 23, isoform a [Caenorhabditis elegans] ref|NP_505307.1| UNCoordinated family member (unc-23) [Caenorhabditis elegans] 1.0E-169
blast AAV58864 Uncoordinated protein 23, isoform c [Caenorhabditis elegans] ref|NP_001024011.1| UNCoordinated family member (unc-23) [Caenorhabditis elegans] 1.0E-168
blast AAV58864 Uncoordinated protein 23, isoform c [Caenorhabditis elegans] ref|NP_001024011.1| UNCoordinated family member (unc-23) [Caenorhabditis elegans] 1.0E-167
blast AAC17781 Uncoordinated protein 23, isoform a [Caenorhabditis elegans] ref|NP_505307.1| UNCoordinated family member (unc-23) [Caenorhabditis elegans] 1.0E-167
blast AAO21425 Uncoordinated protein 23, isoform b [Caenorhabditis elegans] ref|NP_872142.1| UNCoordinated family member (unc-23) [Caenorhabditis elegans] 1.0E-164
blast AAV58864 Uncoordinated protein 23, isoform c [Caenorhabditis elegans] ref|NP_001024011.1| UNCoordinated family member (unc-23) [Caenorhabditis elegans] 1.0E-164
Protein Domains
Database ID Description E-Value
Pfam IPR003103 EMBL-EBI Apoptosis regulator Bcl-2 protein, BAG 4.1E-21
Pfam IPR003103 EMBL-EBI Apoptosis regulator Bcl-2 protein, BAG 4.1E-21
Pfam IPR003103 EMBL-EBI Apoptosis regulator Bcl-2 protein, BAG 4.1E-21
Sequence
Target Sequence 
>C. ELEGANS:188334_AT
gaacaagaaacggacggcgacccatctccactaacctccccaatcaccgaaggaaagcca
aagagaggaaagaaacttcaacgtaatcaaagtgttgttgatttcaatgccaagacaatt
gttactttggataaaattgaattacaagttgagcagttgagaaaaaaagctgctgaactc
gaaatggaaaaagagcaaattcttcgttctctaggagaaatcagtgttcataactgcatg
ttcaaactggaagaatgtgatcgtgaagagattgaagcaatcactgaccgattgacaaaa
agaacaaagacagttcaagttgttgtcgaaactccacgaaatgaagaacagaaaaaagca
ctggaagatgcaactttgatgatcgatgaagtcggagaaatgatgcattcgaatattgaa
aaggctaagctgtgcctacaaacctacatgaacgcctgttcgtacgaagaaactgctgga
gccacctgccaaaacttcttgaagatcataattcagtgcgctgctgatgatcagaaacgc
atcaagcgtcgtctggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAAGAAACGGACGGCGACCCAT 583 351 763 Antisense
CTCCCCAATCACCGAAGGAAAGCCA 214 233 798 Antisense
GTGTTCATAACTGCATGTTCAAACT 145 485 986 Antisense
AGATTGAAGCAATCACTGACCGATT 248 65 1031 Antisense
CAAGTTGTTGTCGAAACTCCACGAA 301 185 1078 Antisense
GCTAAGCTGTGCCTACAAACCTACA 655 301 1186 Antisense
ACAAACCTACATGAACGCCTGTTCG 588 111 1200 Antisense
CGAAGAAACTGCTGGAGCCACCTGC 589 253 1227 Antisense
GAAGATCATAATTCAGTGCGCTGCT 271 337 1263 Antisense
TTCAGTGCGCTGCTGATGATCAGAA 414 687 1274 Antisense
GAAACGCATCAAGCGTCGTCTGGAA 501 357 1296 Antisense
Sequence Source Affymetrix Proprietary Database