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[188325_at]

Description F02A9.3 /REP_DB=WormBase Gene ID /WP=CE00134 /GEN=far-2 /TR=SW:P34383 /GB=CAA79617.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_highest_8_8 > 18      4grp_high_8_8 > 55      6grp_highest_nonorm > 39      6grp_total > 94      4grp_total > 56      6grp_highest_sub > 04_05      6grp_cgc > 87      6grp_high1_sub > 04_05      6grp_cgc_sub > 05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13798
1 2 3 4 range
A 2679
(-2.2)
P 		7514.3
(-0.1)
P 		14626
(3)
P 		828.2
(-3)
P 		13798
B 3053.8
(-2)
P 		6995.6
(-0.2)
P 		13903.6
(3)
P 		894.1
(-3)
P 		13010
C 2328.6
(-2.2)
P 		6678.7
(0.1)
P 		12175.2
(3)
P 		844.7
(-3)
P 		11331
avr 2687.1
(-2.1) 		7062.9
(-0.1) 		13568.3
(3) 		855.7
(-3) 		12713

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10682
1 2 3 4 5 6 range
A 3968.8
(-2.9)
P 		3835.7
(-3)
P 		4817.8
(-2.3)
P 		11758
(2.3)
P 		12859
(3)
P 		9313.3
(0.6)
P 		9023
B 3935.3
(-2.8)
P 		3628.5
(-3)
P 		5773.8
(-1.4)
P 		8565.3
(0.7)
P 		11628.2
(3)
P 		6644.1
(-0.7)
P 		8000
C 4579.9
(-2.4)
P 		3498.1
(-3)
P 		7086.2
(-1)
P 		8413.1
(-0.2)
P 		14180.3
(3)
P 		5851
(-1.7)
P 		10682
avr 4161.3
(-2.7) 		3654.1
(-3) 		5892.6
(-1.5) 		9578.8
(0.8) 		12889.2
(3) 		7269.5
(-0.7) 		9235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4122
1 2 3 4 range
A 975.4
(-1.6)
P 		1631.2
(-0.6)
P 		3823.5
(3)
P 		121.2
(-3)
P 		3702
B 973.8
(-1.4)
P 		1727.8
(0)
P 		3221.8
(3)
P 		190.5
(-3)
P 		3031
C 770.8
(-2.1)
P 		1920.2
(-0.4)
P 		4243.4
(3)
P 		142.4
(-3)
P 		4101
avr 906.7
(-1.7) 		1759.7
(-0.3) 		3762.9
(3) 		151.4
(-3) 		3612

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3993
1 2 3 4 5 6 range
A 731.6
(-3)
P 		1364.2
(-1.8)
P 		1049.2
(-2.4)
P 		2982.1
(1.3)
P 		3880.3
(3)
P 		2267.5
(-0.1)
P 		3149
B 1369.3
(-2.7)
P 		1207.8
(-3)
P 		1402.1
(-2.7)
P 		2268.6
(-1.2)
P 		4724.4
(3)
P 		2477.6
(-0.8)
P 		3517
C 1697.6
(-1.9)
P 		1067.4
(-3)
P 		1803.6
(-1.7)
P 		1691.9
(-1.9)
P 		4588.5
(3)
P 		1958.7
(-1.5)
P 		3521
avr 1266.2
(-2.9) 		1213.1
(-3) 		1418.3
(-2.6) 		2314.2
(-0.9) 		4397.7
(3) 		2234.6
(-1.1) 		3185
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188325_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6269
Sequence Type Exemplar sequence
Representative Public ID F02A9.3 NCBI
Target Description F02A9.3 /REP_DB=WormBase Gene ID /WP=CE00134 /GEN=far-2 /TR=SW:P34383 /GB=CAA79617.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066610(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066610 NCBI Caenorhabditis elegans Fatty Acid/Retinol binding protein family member (far-2) (far-2) mRNA, complete cds. 11/11 None
SNAP00000002184 ENSEMBL cdna:SNAP chromosome:CEL140:III:9081736:9082356:1 11/11 None
GENEFINDER00000002189 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9081736:9082356:1 11/11 None
F02A9.3.1 ENSEMBL cdna:known chromosome:CEL140:III:9081732:9082420:1 gene:F02A9.3 11/11 None
F02A9.3.2 ENSEMBL cdna:known chromosome:CEL140:III:9081734:9082414:1 gene:F02A9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9081731-9082352(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol far-2
Ensembl F02A9.3
Entrez Gene 176284 Entrez gene
SwissProt P34383 EMBL-EBI
WormBase CE00134 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5504 fatty acid binding inferred from sequence similarity QuickGO AmiGO
19841 retinol binding inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA79617 Hypothetical protein F02A9.3 [Caenorhabditis elegans] ref|NP_499011.1| Fatty Acid/Retinol binding protein family member (far-2) [Caenorhabditis elegans] sp|P34383|FAR2_CAEEL Fatty-acid and retinol-binding protein 2 precursor 7.0E-78
blast CAE62670 Hypothetical protein CBG06811 [Caenorhabditis briggsae] 8.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR008632 EMBL-EBI Nematode fatty acid retinoid binding 6.4E-99
Sequence
Target Sequence 
>C. ELEGANS:188325_AT
ggttccacagaacttcgacgacatcccagccgagtacaagggactcatcccagctgaagt
tgccgagcacctcaaggccatcaccgctgaggagaaggctgctcttaaggaactcgccca
aaaccacaaggaatacaagaccgaggaagaattcaaggctgctctcaaggaaaagtctcc
atccctttacgagaaggctggaaagctcgaggctctcctcaccgctaaattcgagaaact
cgatgccaccgctcaggctcttgtcaagaagatcatcgccaagggacgtgaactccacca
acaatacctcgccggagataagccaactcttgattctcttaaggaactcgccaagggata
catcgctgaatacaaggctctttctgatgacgccaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCCACAGAACTTCGACGACATC 349 507 78 Antisense
ACGACATCCCAGCCGAGTACAAGGG 101 91 95 Antisense
ACTCATCCCAGCTGAAGTTGCCGAG 693 99 120 Antisense
AGGCTGCTCTTAAGGAACTCGCCCA 121 49 173 Antisense
AGTCTCCATCCCTTTACGAGAAGGC 408 45 251 Antisense
GAAGGCTGGAAAGCTCGAGGCTCTC 601 333 270 Antisense
TCGCCAAGGGACGTGAACTCCACCA 380 599 353 Antisense
TACCTCGCCGGAGATAAGCCAACTC 302 647 382 Antisense
AAGCCAACTCTTGATTCTCTTAAGG 353 149 397 Antisense
GGAACTCGCCAAGGGATACATCGCT 680 529 420 Antisense
CAAGGCTCTTTCTGATGACGCCAAG 56 183 450 Antisense
Sequence Source Affymetrix Proprietary Database