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[188323_s_at]

Description Y48D7A.2_rc /REP_DB=WormBase Gene ID /WP=CE24387 /TR=Q9N4V0 /GB=AAF60678.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 34      4grp_total > 12      6grp_cgc > 34      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 74.2
(-2.6)
A 		66.1
(-3)
A 		81.2
(-2.2)
A 		180.1
(3)
A 		114
B 97.4
(-1.6)
A 		107.2
(-0.9)
A 		78.7
(-3)
A 		161.5
(3)
A 		83
C 168.6
(0.7)
M 		114.3
(-1.2)
A 		65.1
(-3)
A 		231.8
(3)
A 		167
avr 113.4
(-1) 		95.9
(-1.9) 		75
(-3) 		191.1
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 146.1
(3)
A 		42.8
(-1.6)
A 		113.8
(1.6)
A 		10.4
(-3)
A 		39.4
(-1.7)
A 		31.9
(-2)
A 		136
B 66.4
(-1.7)
A 		63.9
(-2.4)
A 		61.3
(-3)
A 		70.1
(-0.8)
A 		68
(-1.3)
A 		85.6
(3)
A 		24
C 44.8
(-1.3)
A 		128.6
(3)
A 		77.5
(0.4)
A 		57.4
(-0.6)
A 		10.3
(-3)
A 		70.6
(0.1)
A 		118
avr 85.8
(3) 		78.4
(2) 		84.2
(2.8) 		46
(-2.1) 		39.2
(-3) 		62.7
(0) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 27
(3)
A 		14.4
(-3)
A 		21.2
(0.2)
A 		26.4
(2.7)
A 		13
B 31.1
(1.8)
A 		26.5
(0.1)
A 		18.2
(-3)
A 		34.4
(3)
A 		16
C 55.8
(3)
M 		32.9
(-1.2)
A 		22.7
(-3)
A 		39.1
(-0)
A 		33
avr 38
(3) 		24.6
(-1.6) 		20.7
(-3) 		33.3
(1.4) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 26.9
(3)
A 		15.2
(0.1)
A 		24.8
(2.5)
A 		2.6
(-3)
A 		11.9
(-0.7)
A 		7.8
(-1.7)
A 		24
B 23.1
(-0.1)
A 		21.3
(-0.7)
A 		14.9
(-3)
A 		18.6
(-1.7)
A 		27.6
(1.5)
A 		31.9
(3)
A 		17
C 16.6
(-0.8)
A 		39.3
(3)
A 		19.7
(-0.3)
A 		11.5
(-1.6)
A 		3.3
(-3)
A 		23.6
(0.4)
A 		36
avr 22.2
(1.7) 		25.3
(3) 		19.8
(0.7) 		10.9
(-3) 		14.3
(-1.6) 		21.1
(1.3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188323_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28167
Sequence Type Exemplar sequence
Representative Public ID Y48D7A.2 NCBI
Target Description Y48D7A.2_rc /REP_DB=WormBase Gene ID /WP=CE24387 /TR=Q9N4V0 /GB=AAF60678.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y48D7A.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y48D7A.2 Y48D7A.2_rc /REP_DB=WormBase Gene ID /WP=CE24387 /TR=Q9N4V0 /GB=AAF60678.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /REVCOMP None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076113 10/11 Negative Strand Matching Probes A 
GENEFINDER00000042917 11/11 Negative Strand Matching Probes None
SNAP00000042916 9/11 Negative Strand Matching Probes None
Y48D7A.2b 10/11 Negative Strand Matching Probes A 
Y48D7A.2a 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3012407-3015306(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:188323_S_AT
aacacttttcttctcgtcaaaatatgcacgtttaccgaaacggagcactcccggcatttc
ttttttctgcacactgctttctcttttttcccaaacacctccacgttttccaaagcgcaa
cacacctggcatcgccccatcaaagtctctttttgagaatacccgaccgtcttgtttctc
gttggtccgagtcacttcgatatcctctgctggtatgtcttcttcgacgatttcatagat
tggttcggtatatgcgagcgccccacgaagcaaacaacacagcgaaatgagaagaacgcc
cgaccaccgttgcatgtctaaccttgaatagacataactttcgatctttggaaggaattt
taaggcttgggaggaagatttttcattcaaaaaaaaacataattgatcagcccgttcaga
caca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACTTTTCTTCTCGTCAAAATAT 87 135 325 Antisense
TTACCGAAACGGAGCACTCCCGGCA 570 667 356 Antisense
GCATTTCTTTTTTCTGCACACTGCT 215 309 378 Antisense
ACGTTTTCCAAAGCGCAACACACCT 459 1 427 Antisense
TCGCCCCATCAAAGTCTCTTTTTGA 567 599 456 Antisense
TGAGAATACCCGACCGTCTTGTTTC 304 569 478 Antisense
GTCTTGTTTCTCGTTGGTCCGAGTC 90 467 493 Antisense
TTGGTCCGAGTCACTTCGATATCCT 47 703 506 Antisense
TCTGCTGGTATGTCTTCTTCGACGA 385 609 530 Antisense
CGCCCCACGAAGCAAACAACACAGC 689 255 583 Antisense
TAATTGATCAGCCCGTTCAGACACA 331 633 724 Antisense
Sequence Source Affymetrix Proprietary Database