[Home] | [Total List]

[188321_at]

Description C33D12.3 /REP_DB=WormBase Gene ID /WP=CE06905 /GEN=twk-25 /TR=Q21467 /GB=AAK39200.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 35      6grp_total > 10      4grp_total > 05      6grp_cgc > 55      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 108.4
(0.9)
P 		25.1
(-2.5)
A 		11.7
(-3)
A 		162.1
(3)
A 		150
B 66.5
(-0.2)
A 		40.2
(-3)
A 		67.5
(-0)
A 		95.6
(3)
A 		55
C 84.2
(-1.5)
P 		47.7
(-3)
A 		61.2
(-2.4)
P 		193.3
(3)
A 		146
avr 86.4
(-0.4) 		37.7
(-3) 		46.8
(-2.5) 		150.3
(3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 23.7
(-3)
A 		61.2
(1.3)
M 		60.7
(1.2)
P 		69.9
(2.3)
P 		66.8
(1.9)
A 		76.3
(3)
A 		53
B 69.8
(-0.9)
A 		82.7
(0.8)
A 		91.1
(1.9)
A 		54.5
(-3)
P 		54.4
(-3)
A 		99.1
(3)
P 		45
C 81.2
(-0.9)
P 		114.3
(3)
P 		78.6
(-1.2)
A 		97.5
(1)
M 		63.4
(-3)
P 		70.1
(-2.2)
P 		51
avr 58.2
(-3) 		86.1
(3) 		76.8
(1) 		74
(0.4) 		61.5
(-2.3) 		81.8
(2.1) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 39.5
(3)
P 		5.5
(-2.6)
A 		3.1
(-3)
A 		23.7
(0.4)
A 		36
B 21.2
(3)
A 		9.9
(-3)
A 		15.6
(0)
A 		20.4
(2.6)
A 		11
C 27.9
(1.5)
P 		13.7
(-3)
A 		21.3
(-0.6)
P 		32.6
(3)
A 		19
avr 29.5
(3) 		9.7
(-3) 		13.3
(-1.9) 		25.6
(1.8) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 4.4
(-3)
A 		21.8
(3)
M 		13.2
(0)
P 		17.7
(1.6)
P 		20.1
(2.4)
A 		18.6
(1.9)
A 		17
B 24.3
(-0.4)
A 		27.5
(0.5)
A 		22.1
(-0.9)
A 		14.4
(-3)
P 		22.1
(-0.9)
A 		36.9
(3)
P 		23
C 30.1
(1.1)
P 		34.9
(3)
P 		20
(-2.8)
A 		19.6
(-3)
M 		20.5
(-2.6)
P 		23.5
(-1.5)
P 		15
avr 19.6
(-1.7) 		28.1
(3) 		18.4
(-2.3) 		17.2
(-3) 		20.9
(-1) 		26.3
(2) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188321_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18407
Sequence Type Exemplar sequence
Representative Public ID C33D12.3 NCBI
Target Description C33D12.3 /REP_DB=WormBase Gene ID /WP=CE06905 /GEN=twk-25 /TR=Q21467 /GB=AAK39200.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076121(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076121 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-26) (twk-26) mRNA, complete cds. 11/11 None
SNAP00000019205 ENSEMBL cdna:SNAP chromosome:CEL140:X:3050485:3053575:-1 11/11 None
GENEFINDER00000019212 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3050485:3053802:-1 11/11 None
C33D12.3 ENSEMBL cdna:known chromosome:CEL140:X:3050485:3054404:-1 gene:C33D12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3050484-3053820(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol twk-26
Ensembl C33D12.3
Entrez Gene 180592 Entrez gene
SwissProt Q21467 EMBL-EBI
WormBase CE04766 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6811 ion transport inferred from electronic annotation QuickGO AmiGO
6813 potassium ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5216 ion channel activity inferred from electronic annotation QuickGO AmiGO
5267 potassium channel activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39200 Twik family of potassium channels protein 26 [Caenorhabditis elegans] ref|NP_508522.2| TWiK family of potassium channels family member (twk-26) [Caenorhabditis elegans] pir||T16629 hypothetical protein M02F4.5 - Caenorhabditis elegans 0.0
blast AAC32864 putative potassium channel subunit n2P26 [Caenorhabditis elegans] 0.0
blast CAE68368 Hypothetical protein CBG14123 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508522.2 6 82-104,182-204,211-233,269-291,304-326,336-358
C33D12.3 6 82-104,182-204,211-233,269-291,304-326,336-358
SNAP00000019205 5 82-104,109-131,167-189,204-226,233-255
GENEFINDER00000019212 6 41-63,143-165,170-192,228-250,265-287,294-316
Sequence
Target Sequence 
>C. ELEGANS:188321_AT
gattgggtgatgtcatgccttacaatattcagtattctccattcctggcggctgcgttcc
tgttgggtcttgcactcatttctatcgtgaatacatcaatctatgctcagttgtaccaga
tgttctttaacatgattaattctgttgaagatcaattggacagaattcacagttctaatc
acaaggggccgggttacaaagtttttcacgatatggaaccggtgtttagaatgttggtct
gcactttccctccgtcacatccccaaactcgaatcaaatttgccgccgttgttcgtgact
cgttcagaagagataaagaaaagaagcgggaaagcaacacgagtgaccaaattaaattgc
gaacaagaaccgaatcggatataccagcacacgatggattccacctgtggatgaccaaac
gagcaaagaagcgtcagatggagcaagagaacgaggacttgcatgctgccagaagacgtg
caccaactttaggagcatttggtggatttgatatgaatcttttcaaacgcggacgctcga
atacttcgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGGGTGATGTCATGCCTTACAA 443 435 869 Antisense
ATATTCAGTATTCTCCATTCCTGGC 681 17 893 Antisense
GGTCTTGCACTCATTTCTATCGTGA 584 503 934 Antisense
ATGCTCAGTTGTACCAGATGTTCTT 220 43 971 Antisense
TAGAATGTTGGTCTGCACTTTCCCT 489 651 1095 Antisense
TCACATCCCCAAACTCGAATCAAAT 413 627 1123 Antisense
CGAATCAAATTTGCCGCCGTTGTTC 193 251 1138 Antisense
GCACACGATGGATTCCACCTGTGGA 252 317 1255 Antisense
GAGAACGAGGACTTGCATGCTGCCA 657 391 1315 Antisense
GAAGACGTGCACCAACTTTAGGAGC 594 337 1340 Antisense
AAACGCGGACGCTCGAATACTTCGC 259 125 1393 Antisense
Sequence Source Affymetrix Proprietary Database