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[188318_at]

Description F48D6.1 /REP_DB=WormBase Gene ID /WP=CE07258 /GEN=taf-7.1 /TR=Q20563 /GB=AAB00597.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 59      4grp_high_8_8 > 03      6grp_total > 38      4grp_total > 13      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 224
(-1.2)
P 		230.1
(-0.7)
A 		203.2
(-3)
P 		272
(3)
P 		69
B 200
(-0)
P 		194.7
(-0.3)
M 		151.4
(-3)
P 		249.1
(3)
P 		98
C 263.5
(1.3)
P 		172.4
(-3)
P 		173.5
(-2.9)
P 		298.8
(3)
P 		126
avr 229.2
(0.3) 		199.1
(-1.6) 		176
(-3) 		273.3
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 184.5
(-0.6)
A 		180.5
(-0.9)
P 		185
(-0.6)
P 		232.2
(3)
A 		153.5
(-3)
P 		186.5
(-0.5)
P 		79
B 224.8
(1.4)
P 		190.2
(-0.5)
P 		142.7
(-3)
P 		150.4
(-2.6)
P 		254.9
(3)
P 		157.5
(-2.2)
P 		112
C 169.4
(0.3)
P 		180.4
(0.9)
P 		161.4
(-0.1)
P 		116.2
(-2.3)
A 		102.2
(-3)
A 		223
(3)
P 		121
avr 192.9
(3) 		183.7
(1.2) 		163
(-3) 		166.3
(-2.3) 		170.2
(-1.6) 		189
(2.2) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 81.6
(3)
P 		49.9
(-1.6)
A 		53.1
(-1.1)
P 		39.8
(-3)
P 		42
B 63.8
(3)
P 		48.1
(-0.3)
M 		35.1
(-3)
P 		53.1
(0.8)
P 		29
C 87.2
(3)
P 		49.6
(-3)
P 		60.5
(-1.3)
P 		50.4
(-2.9)
P 		38
avr 77.5
(3) 		49.2
(-2.7) 		49.6
(-2.6) 		47.8
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 34
(-3)
A 		64.2
(3)
P 		40.3
(-1.7)
P 		58.9
(1.9)
A 		46.3
(-0.6)
P 		45.4
(-0.7)
P 		30
B 78.2
(0.8)
P 		63.3
(-0.5)
P 		34.6
(-3)
P 		39.8
(-2.5)
P 		103.6
(3)
P 		58.7
(-0.9)
P 		69
C 62.8
(1.6)
P 		55.1
(0.7)
P 		41.1
(-0.9)
P 		23.4
(-3)
A 		33.1
(-1.9)
A 		74.6
(3)
P 		51
avr 58.3
(2.3) 		60.9
(3) 		38.7
(-3) 		40.7
(-2.5) 		61
(3) 		59.6
(2.6) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188318_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17162
Sequence Type Exemplar sequence
Representative Public ID F48D6.1 NCBI
Target Description F48D6.1 /REP_DB=WormBase Gene ID /WP=CE07258 /GEN=taf-7.1 /TR=Q20563 /GB=AAB00597.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076326(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076326 NCBI Caenorhabditis elegans TAF (TBP-associated transcription factor) family member (taf-11.1) (taf-11.1) mRNA, complete cds. 11/11 None
SNAP00000014546 ENSEMBL cdna:SNAP chromosome:CEL140:X:4255462:4256702:1 11/11 None
GENEFINDER00000014561 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4255468:4256702:1 11/11 None
F48D6.1.1 ENSEMBL cdna:known chromosome:CEL140:X:4255142:4256770:1 gene:F48D6.1 11/11 None
F48D6.1.2 ENSEMBL cdna:known chromosome:CEL140:X:4255144:4256723:1 gene:F48D6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4255151-4256703(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol taf-11.1
Ensembl F48D6.1
Entrez Gene 180698 Entrez gene
SwissProt Q20563 EMBL-EBI
WormBase CE07258 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1603116_X_AT similar to Transcription initiation factor TFIID subunit 11 (Transcription initiation factor TFIID 28 kDa subunit) (TAF(II)28) (TAFII-28) (TAFII28) (TFIID subunit p30-beta) cfa
CANINE:1590667_S_AT similar to Transcription initiation factor TFIID subunit 11 (Transcription initiation factor TFIID 28 kDa subunit) (TAF(II)28) (TAFII-28) (TAFII28) (TFIID subunit p30-beta) cfa
CANINE_2:CFA.10500.1.S1_AT similar to Transcription initiation factor TFIID subunit 11 (Transcription initiation factor TFIID 28 kDa subunit) (TAF(II)28) (TAFII-28) (TAFII28) (TFIID subunit p30-beta) cfa
CANINE_2:CFAAFFX.2759.1.S1_AT similar to Transcription initiation factor TFIID subunit 11 (Transcription initiation factor TFIID 28 kDa subunit) (TAF(II)28) (TAFII-28) (TAFII28) (TFIID subunit p30-beta) cfa
CANINE_2:CFAAFFX.2759.1.S1_S_AT similar to Transcription initiation factor TFIID subunit 11 (Transcription initiation factor TFIID 28 kDa subunit) (TAF(II)28) (TAFII-28) (TAFII28) (TFIID subunit p30-beta) cfa
DROSOPHILA_2:1636486_AT TBP-associated factor 11 dm
DROSGENOME1:143651_AT TBP-associated factor 11 dm
CHICKEN:GGA.4860.1.S1_S_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa gga
HG-U95AV2:131_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa hs
HC-G110:131_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa hs
HG-U95AV2:38426_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa hs
HG-U133_PLUS_2:209358_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa hs
HG-U133A:209358_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa hs
HG-FOCUS:209358_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa hs
HG-U133A_2:209358_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa hs
HUGENEFL:X83928_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa hs
U133_X3P:G6650833_3P_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa hs
U133_X3P:HS2.379936.1.A1_3P_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa hs
HG-U133_PLUS_2:1558135_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa hs
HG-U133_PLUS_2:1558136_S_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa hs
HG-U95D:75297_R_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa hs
HG-U95E:85837_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa hs
MG-U74AV2:96691_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MG-U74CV2:170787_R_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOE430A:1451995_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOUSE430A_2:1451995_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOUSE430_2:1451995_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOE430B:1446161_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, mRNA (cDNA clone MGC:6331 IMAGE:3483315) mm
MOUSE430_2:1446161_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, mRNA (cDNA clone MGC:6331 IMAGE:3483315) mm
MG-U74CV2:170704_I_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, mRNA (cDNA clone MGC:6331 IMAGE:3483315) mm
MU19KSUBC:TC39997_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, mRNA (cDNA clone MGC:6331 IMAGE:3483315) mm
RG-U34C:RC_AI232053_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) rn
RAE230A:1389025_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) rn
RAT230_2:1389025_AT TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
45449 regulation of transcription inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB00597 Taf (tbp-associated transcription factor) family protein 11.1 [Caenorhabditis elegans] ref|NP_508727.1| TAF (TBP-associated transcription factor) family member (taf-11.1) [Caenorhabditis elegans] 1.0E-133
blast AAB00597 Taf (tbp-associated transcription factor) family protein 11.1 [Caenorhabditis elegans] ref|NP_508727.1| TAF (TBP-associated transcription factor) family member (taf-11.1) [Caenorhabditis elegans] 1.0E-104
blast AAB00597 Taf (tbp-associated transcription factor) family protein 11.1 [Caenorhabditis elegans] ref|NP_508727.1| TAF (TBP-associated transcription factor) family member (taf-11.1) [Caenorhabditis elegans] 1.0E-103
blast CAE68546 Hypothetical protein CBG14378 [Caenorhabditis briggsae] 1.0E-68
blast CAE68546 Hypothetical protein CBG14378 [Caenorhabditis briggsae] 9.0E-61
blast CAE68546 Hypothetical protein CBG14378 [Caenorhabditis briggsae] 3.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR006809 EMBL-EBI TAFII28-like protein 7.5E-57
Pfam IPR006809 EMBL-EBI TAFII28-like protein 7.5E-57
Pfam IPR006809 EMBL-EBI TAFII28-like protein 7.5E-57
Sequence
Target Sequence 
>C. ELEGANS:188318_AT
gccaccaagaaagcagccacgtcatgatgataactctgaagctgggcccagcgggcagat
ttcgggagacgacgaccttctggacacaaacatttcgctggaaagcttcgacttgagcaa
agtaaacgatgcaaggtaccaagcattgattcaacaacatcagccggaagaagaagcgcc
tggcccctcacgtccagcaccagctcgtccagcgcggaaacttgacgatgaagaagaaaa
tgagctttcgcgattgaagacacaagttttgctttccaacttttcacaagagcaactgga
aagatatgagtcatacagacgctcttcattccaaaagtcgactattcgccgtttgatcag
tcagtacactggaggagtgaacgttggacagagtgtggtcatcgctatcgcaggattggc
taaggtgttcgtcggtgaagttgtcgaagaagcattggatattcgtgacataaatgagga
agaagctagcaatccactacagccgcatcatattcgtcaagcgttcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCACCAAGAAAGCAGCCACGTCAT 616 279 459 Antisense
GATGATAACTCTGAAGCTGGGCCCA 99 407 484 Antisense
GGCCCAGCGGGCAGATTTCGGGAGA 56 543 503 Antisense
TTTCGGGAGACGACGACCTTCTGGA 44 667 518 Antisense
GACCTTCTGGACACAAACATTTCGC 640 379 532 Antisense
GTTTTGCTTTCCAACTTTTCACAAG 477 447 724 Antisense
GAGTCATACAGACGCTCTTCATTCC 690 399 766 Antisense
AAAGTCGACTATTCGCCGTTTGATC 517 119 792 Antisense
GACAGAGTGTGGTCATCGCTATCGC 421 369 845 Antisense
GATTGGCTAAGGTGTTCGTCGGTGA 237 433 872 Antisense
GCATCATATTCGTCAAGCGTTCCTC 82 307 963 Antisense
Sequence Source Affymetrix Proprietary Database