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[188317_at] 7TM chemoreceptor, srh family

Description T27A1.1 /REP_DB=WormBase Gene ID /WP=CE21209 /GEN=srh-105 /TR=O17277 /GB=AAF02175.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 11.9
(-3)
A 		82.4
(3)
A 		61.3
(1.2)
A 		63.6
(1.4)
A 		71
B 47.7
(-0.8)
A 		56
(-0.4)
A 		124.9
(3)
A 		2.6
(-3)
A 		122
C 4.4
(-3)
A 		54.4
(1.1)
A 		59.7
(1.6)
A 		77.2
(3)
A 		73
avr 21.3
(-3) 		64.3
(1.3) 		82
(3) 		47.8
(-0.4) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 7.9
(-2.8)
A 		49.5
(1.7)
A 		55
(2.3)
A 		61.7
(3)
A 		55
(2.3)
A 		5.9
(-3)
A 		56
B 59.7
(2.7)
A 		52.8
(1.8)
A 		61.5
(3)
A 		32.2
(-1.2)
A 		19.5
(-3)
A 		37.5
(-0.4)
A 		42
C 37.6
(-1.1)
A 		38.1
(-1)
A 		59.1
(2.6)
A 		61.3
(3)
A 		26.8
(-3)
A 		27.1
(-2.9)
A 		35
avr 35.1
(-1) 		46.8
(1) 		58.5
(3) 		51.7
(1.8) 		33.8
(-1.2) 		23.5
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 4.3
(-3)
A 		17.9
(3)
A 		16
(2.2)
A 		9.3
(-0.8)
A 		14
B 15.2
(0.1)
A 		13.8
(-0.2)
A 		28.9
(3)
A 		0.6
(-3)
A 		28
C 1.5
(-3)
A 		15.6
(1.4)
A 		20.8
(3)
A 		13
(0.6)
A 		19
avr 7
(-3) 		15.8
(0.5) 		21.9
(3) 		7.6
(-2.8) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 1.5
(-3)
A 		17.6
(3)
A 		12
(0.9)
A 		15.7
(2.3)
A 		16.6
(2.6)
A 		1.4
(-3)
A 		16
B 20.8
(3)
A 		17.6
(1.5)
A 		14.9
(0.3)
A 		8.5
(-2.7)
A 		7.9
(-3)
A 		14
(-0.2)
A 		13
C 13.9
(2)
A 		11.6
(-0.2)
A 		15
(3)
A 		12.3
(0.4)
A 		8.7
(-3)
A 		9.1
(-2.6)
A 		6
avr 12.1
(0.2) 		15.6
(3) 		14
(1.7) 		12.2
(0.2) 		11.1
(-0.6) 		8.2
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188317_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4610
Sequence Type Exemplar sequence
Representative Public ID T27A1.1 NCBI
Target Description T27A1.1 /REP_DB=WormBase Gene ID /WP=CE21209 /GEN=srh-105 /TR=O17277 /GB=AAF02175.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061347(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061347 NCBI Caenorhabditis elegans T27A1.1 (T27A1.1) mRNA, complete cds. 11/11 None
SNAP00000021273 ENSEMBL cdna:SNAP chromosome:CEL140:II:503327:506013:-1 11/11 None
T27A1.1 ENSEMBL cdna:known chromosome:CEL140:II:503228:506013:-1 gene:T27A1.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000021284 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:503227-506013(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Ensembl T27A1.1
Entrez Gene 191880 Entrez gene
SwissProt O17277 EMBL-EBI
WormBase CE21209 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_493748 T27A1.1 [Caenorhabditis elegans] gb|AAF02175.1| Serpentine receptor, class h protein 105 [Caenorhabditis elegans] 2.0E-86
blast B88023 protein T27A1.1 [imported] - Caenorhabditis elegans 2.0E-86
blast NP_493748 T27A1.1 [Caenorhabditis elegans] gb|AAF02175.1| Serpentine receptor, class h protein 105 [Caenorhabditis elegans] 1.0E-77
blast B88023 protein T27A1.1 [imported] - Caenorhabditis elegans 1.0E-77
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493748.1 1 142-161
T27A1.1 1 142-161
Sequence
Target Sequence 
>C. ELEGANS:188317_AT
aacgatcctggtttgaggcttcttcgttcacggattcccgtctcgaagcaggtcaatcac
gaaagagaagtgtcgctagaagagtttgcgtcaccagaagcgcccgagaagagccgcgaa
gaactaggcaagctgattcatctccaagacgttcaattttgctgccaatctgcaatttcg
acttcaccgtctcttcaacgattgtcaacggaatagccggaaatggagggcaaaagaagg
aagcctacatactcaattctgatgtctcaatggaaacctactctgcatatttctggagaa
gcggagggcacattccgatcgttgtcatttacggaatggtcttttgttctacgaaagtcg
agagtggctggagccttggatacaccggaatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGATCCTGGTTTGAGGCTTCTTC 349 145 20 Antisense
AGAGTTTGCGTCACCAGAAGCGCCC 637 67 100 Antisense
CAGAAGCGCCCGAGAAGAGCCGCGA 268 205 114 Antisense
AGGCAAGCTGATTCATCTCCAAGAC 377 53 145 Antisense
AATCTGCAATTTCGACTTCACCGTC 656 169 186 Antisense
GGAAGCCTACATACTCAATTCTGAT 5 531 258 Antisense
GGAAACCTACTCTGCATATTTCTGG 36 529 291 Antisense
GCACATTCCGATCGTTGTCATTTAC 192 317 327 Antisense
TACGGAATGGTCTTTTGTTCTACGA 707 647 349 Antisense
GAAAGTCGAGAGTGGCTGGAGCCTT 186 359 372 Antisense
GGAGCCTTGGATACACCGGAATTTG 616 521 389 Antisense
Sequence Source Affymetrix Proprietary Database