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[188315_s_at]

Description Y39B6B.GG_rc /REP_DB=WormBase Gene ID /WP=CE21682 /TR=Q9NES7 /GB=CAB60938.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 46      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 65.2
(3)
A 		40.9
(0.6)
A 		3.6
(-3)
A 		43.5
(0.9)
A 		62
B 16.1
(-2)
A 		51.6
(3)
A 		47.1
(2.4)
A 		8.6
(-3)
A 		43
C 35.2
(-0.2)
A 		12.7
(-3)
A 		13.5
(-2.9)
A 		60.9
(3)
A 		48
avr 38.8
(3) 		35.1
(1.7) 		21.4
(-3) 		37.7
(2.6) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 30.3
(-0.7)
A 		41.6
(0.3)
A 		34.9
(-0.3)
A 		71.6
(3)
A 		4.1
(-3)
A 		32.8
(-0.4)
A 		68
B 42.9
(0.2)
A 		64.6
(3)
A 		33.8
(-0.9)
A 		17.5
(-3)
A 		26
(-1.9)
A 		34.1
(-0.9)
A 		47
C 28.3
(0.5)
A 		45.6
(3)
A 		28.1
(0.4)
A 		6.4
(-2.7)
A 		4.5
(-3)
A 		43.5
(2.7)
A 		41
avr 33.8
(0.4) 		50.6
(3) 		32.3
(0.2) 		31.8
(0.1) 		11.5
(-3) 		36.8
(0.9) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 23.7
(3)
A 		8.9
(-0.9)
A 		0.9
(-3)
A 		6.4
(-1.6)
A 		23
B 5.1
(-1.2)
A 		12.7
(3)
A 		10.9
(2)
A 		1.8
(-3)
A 		11
C 11.6
(3)
A 		3.6
(-3)
A 		4.7
(-2.2)
A 		10.3
(2)
A 		8
avr 13.5
(3) 		8.4
(-0.8) 		5.5
(-3) 		6.2
(-2.5) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.6
(-1.4)
A 		14.8
(1.8)
A 		7.6
(-0.7)
A 		18.2
(3)
A 		1.2
(-3)
A 		8
(-0.6)
A 		17
B 14.9
(0.7)
A 		21.5
(3)
A 		8.2
(-1.7)
A 		4.6
(-3)
A 		10.6
(-0.9)
A 		12.7
(-0.1)
A 		17
C 10.5
(1.2)
A 		13.9
(2.7)
A 		7.2
(-0.3)
A 		1.3
(-3)
A 		1.4
(-3)
A 		14.6
(3)
A 		13
avr 10.3
(-0.1) 		16.7
(3) 		7.7
(-1.4) 		8
(-1.2) 		4.4
(-3) 		11.8
(0.6) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188315_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28200
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.GG NCBI
Target Description Y39B6B.GG_rc /REP_DB=WormBase Gene ID /WP=CE21682 /TR=Q9NES7 /GB=CAB60938.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y39B6B.GG
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y39B6B.GG Y39B6B.GG_rc /REP_DB=WormBase Gene ID /WP=CE21682 /TR=Q9NES7 /GB=CAB60938.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171608 11/11 Negative Strand Matching Probes A 
SNAP00000030556 11/11 Negative Strand Matching Probes None
GENEFINDER00000030691 11/11 Negative Strand Matching Probes None
Y39B6A.1.2 11/11 Negative Strand Matching Probes None
Y39B6A.1.1 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19203754-19206170(+) 94.25 100.0
Sequence
Target Sequence 
>C. ELEGANS:188315_S_AT
tcagccttcttgtgatgcttcttcagatgcttcttggcatgcttcttatggtgatgcttc
tcgtcttcggactcagatgaggagctggaagaggagcttgagctggagctcgaggagctg
gatgagctggaagagctagactcggccttcttgtgatgcttcttaagatgcttcttggcg
tgcttcttgtggtggtgcttctcgtcctcggattcagacgaagaggaagaggatgaggat
gagctggaggagctggagctcgagctgctgctggaggaggagctggagctgctcgagtcc
tgagccttcacatggtgatggtggtggtggacctcgtggtggcctggatgggctccgtga
gcatgatgggtatggtgaccgtggtgtggggagatgaagctcaggaatcctttcaatgag
atgtgtccatcatgagcatgatgatcaaagaccttctggaagtggagctccttggccagg
tgctcaatatcgtggagcgccgagcgagcttcatcccgagtgagcttatgcccgtgcgag
gagtgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCCTTCTTGTGATGCTTCTTCA 227 625 1607 Antisense
TGATGCTTCTTCAGATGCTTCTTGG 570 565 1619 Antisense
TGCTTCTTGGCATGCTTCTTATGGT 611 579 1634 Antisense
CTTCTCGTCTTCGGACTCAGATGAG 5 221 1663 Antisense
GCTTCTCGTCCTCGGATTCAGACGA 450 305 1803 Antisense
GTCCTGAGCCTTCACATGGTGATGG 690 475 1903 Antisense
TTCTGGAAGTGGAGCTCCTTGGCCA 709 691 2060 Antisense
CCTTGGCCAGGTGCTCAATATCGTG 546 269 2076 Antisense
ATATCGTGGAGCGCCGAGCGAGCTT 642 19 2093 Antisense
CGAGCTTCATCCCGAGTGAGCTTAT 418 251 2111 Antisense
AGCTTATGCCCGTGCGAGGAGTGCT 300 79 2129 Antisense
Sequence Source Affymetrix Proprietary Database