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[188310_at]

Description R05H5.1 /REP_DB=WormBase Gene ID /WP=CE03529 /GEN=srd-2 /TR=SW:Q21767 /GB=CAA88731.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 03      6grp_cgc > 39      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 39.2
(-1)
A 		21.3
(-3)
A 		26.3
(-2.4)
A 		74.7
(3)
A 		53
B 17
(-3)
A 		32.4
(-0.4)
A 		21.5
(-2.2)
A 		52.3
(3)
A 		35
C 43.3
(-1.6)
M 		25.5
(-2.7)
A 		20.4
(-3)
A 		119.7
(3)
A 		99
avr 33.2
(-1.9) 		26.4
(-2.6) 		22.7
(-3) 		82.2
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 56.1
(1.7)
A 		16.6
(-1.9)
A 		4
(-3)
A 		5
(-2.9)
A 		46.6
(0.8)
A 		70.5
(3)
A 		67
B 26.2
(-1)
A 		24.5
(-1.1)
A 		3.9
(-3)
A 		69.8
(3)
A 		34.8
(-0.2)
A 		52.9
(1.5)
A 		66
C 22.5
(-1.3)
A 		59.2
(3)
M 		53.4
(2.3)
A 		46.2
(1.5)
A 		7.8
(-3)
A 		26.4
(-0.8)
A 		51
avr 34.9
(-0.1) 		33.4
(-0.4) 		20.4
(-3) 		40.3
(1) 		29.7
(-1.1) 		49.9
(3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 14.3
(3)
A 		4.6
(-3)
A 		6.9
(-1.6)
A 		10.9
(0.9)
A 		10
B 5.4
(-2.6)
A 		8
(-0.1)
A 		5
(-3)
A 		11.2
(3)
A 		6
C 14.3
(0.3)
M 		7.3
(-2.9)
A 		7.1
(-3)
A 		20.2
(3)
A 		13
avr 11.3
(0.8) 		6.6
(-2.8) 		6.3
(-3) 		14.1
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 10.3
(0.5)
A 		5.9
(-1.2)
A 		0.9
(-3)
A 		1.3
(-2.9)
A 		14
(1.8)
A 		17.2
(3)
A 		16
B 9.1
(-0.4)
A 		8.2
(-0.7)
A 		0.9
(-3)
A 		18.5
(2.6)
A 		14.1
(1.2)
A 		19.7
(3)
A 		19
C 8.3
(-0.8)
A 		18.1
(3)
M 		13.6
(1.3)
A 		9.3
(-0.4)
A 		2.5
(-3)
A 		8.8
(-0.6)
A 		16
avr 9.2
(-0.6) 		10.7
(0.3) 		5.1
(-3) 		9.7
(-0.3) 		10.2
(0) 		15.2
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188310_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3730
Sequence Type Exemplar sequence
Representative Public ID R05H5.1 NCBI
Target Description R05H5.1 /REP_DB=WormBase Gene ID /WP=CE03529 /GEN=srd-2 /TR=SW:Q21767 /GB=CAA88731.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063795(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063795 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-2) (srd-2) mRNA, complete cds. 11/11 None
SNAP00000021964 ENSEMBL cdna:SNAP chromosome:CEL140:II:10185700:10187046:-1 11/11 None
GENEFINDER00000021975 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10185700:10187819:-1 10/11 None
R05H5.1 ENSEMBL cdna:known chromosome:CEL140:II:10185793:10187819:-1 gene:R05H5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10185789-10187816(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-2
Ensembl R05H5.1
Entrez Gene 191795 Entrez gene
SwissProt Q21767 EMBL-EBI
WormBase CE03529 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88731 Hypothetical protein R05H5.1 [Caenorhabditis elegans] ref|NP_496196.1| Serpentine Receptor, class D (delta) family member (srd-2) [Caenorhabditis elegans] sp|Q21767|SRD2_CAEEL Serpentine receptor class delta-2 (Protein srd-2) 0.0
blast 2123261AQ chemosensory receptor 0.0
blast CAA88731 Hypothetical protein R05H5.1 [Caenorhabditis elegans] ref|NP_496196.1| Serpentine Receptor, class D (delta) family member (srd-2) [Caenorhabditis elegans] sp|Q21767|SRD2_CAEEL Serpentine receptor class delta-2 (Protein srd-2) 1.0E-172
blast 2123261AQ chemosensory receptor 1.0E-165
blast CAE57883 Hypothetical protein CBG00929 [Caenorhabditis briggsae] 1.0E-131
blast CAA88731 Hypothetical protein R05H5.1 [Caenorhabditis elegans] ref|NP_496196.1| Serpentine Receptor, class D (delta) family member (srd-2) [Caenorhabditis elegans] sp|Q21767|SRD2_CAEEL Serpentine receptor class delta-2 (Protein srd-2) 1.0E-130
blast 2123261AQ chemosensory receptor 1.0E-126
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496196.1 7 23-45,57-79,103-125,145-164,207-229,255-277,292-311
R05H5.1 7 23-45,57-79,103-125,145-164,207-229,255-277,292-311
SNAP00000021964 4 4-23,36-53,96-118,155-177
GENEFINDER00000021975 7 23-45,57-79,103-125,145-164,229-251,258-280,295-317
Sequence
Target Sequence 
>C. ELEGANS:188310_AT
ggcattgtactctatgtcactttgctttttgttggtctacgtttttgataacagtgattc
cgacctattgtttcaaattctcacccgtgttcatccagaatatcattatgatgatgagag
tatttggaagaaaagcattgtggtcagtggaaatatctcagcatttgctccaataactct
tatctcaatactttatatgacaatcccatgtgtaccaatttactgtgcaattctatattt
ccgacataatactcgcgttatcctgaacaatcctcacatcaatttgtcgcccactgcaaa
atctaaccatgtgaagcttatcagggctctcacagttcaagctggtattccgatattttg
gcttgttgcgtctggaatcttcacaatgtcacagtttggaataattggaggacctattcc
ggaaaatattacatttcgactaatggattgtattccattgattagtccaattgtcacaat
tatttttgttcagccatatagagaaggtctcctcaaggttttgctgaaaaattctggtct
cttcgttccaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCATTGTACTCTATGTCACTTTGC 500 537 459 Antisense
GTGATTCCGACCTATTGTTTCAAAT 297 483 512 Antisense
TTTCAAATTCTCACCCGTGTTCATC 196 673 529 Antisense
GACAATCCCATGTGTACCAATTTAC 705 363 657 Antisense
TCGCGTTATCCTGAACAATCCTCAC 81 601 711 Antisense
TGTCGCCCACTGCAAAATCTAACCA 109 557 743 Antisense
ATCAGGGCTCTCACAGTTCAAGCTG 312 29 778 Antisense
GATATTTTGGCTTGTTGCGTCTGGA 408 427 810 Antisense
GCGTCTGGAATCTTCACAATGTCAC 66 293 826 Antisense
GAAGGTCTCCTCAAGGTTTTGCTGA 334 333 961 Antisense
AAATTCTGGTCTCTTCGTTCCAAAT 21 117 987 Antisense
Sequence Source Affymetrix Proprietary Database