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[188302_at] 7TM chemoreceptor, srh family

Description F31F4.6 /REP_DB=WormBase Gene ID /WP=CE09826 /GEN=srh-266 /TR=O17130 /GB=AAG24084.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 20      6grp_total > 93      4grp_total > 03      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 49.6
(-2.6)
A 		41
(-3)
A 		44.5
(-2.8)
P 		156.7
(3)
P 		116
B 103.3
(-2.7)
P 		116.2
(3)
P 		102.6
(-3)
P 		111.7
(1)
P 		14
C 74.5
(-1.2)
P 		45.9
(-3)
A 		47.9
(-2.9)
A 		140.7
(3)
P 		95
avr 75.8
(-2.1) 		67.7
(-2.8) 		65
(-3) 		136.4
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 68.4
(2.4)
A 		30.3
(-2.8)
A 		37.5
(-1.8)
A 		29
(-3)
A 		70.2
(2.7)
P 		72.7
(3)
P 		44
B 46.7
(-3)
P 		73.9
(1.6)
P 		65.2
(0.2)
P 		61.2
(-0.5)
A 		81.9
(3)
P 		47.7
(-2.8)
P 		35
C 60.3
(3)
P 		39.2
(-2.3)
P 		48.5
(0)
A 		36.6
(-3)
A 		60
(2.9)
P 		46.3
(-0.5)
P 		24
avr 58.5
(0.4) 		47.8
(-1.8) 		50.4
(-1.3) 		42.3
(-3) 		70.7
(3) 		55.6
(-0.2) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 18
(0.9)
A 		8.9
(-3)
A 		11.6
(-1.8)
P 		22.9
(3)
P 		14
B 32.9
(3)
P 		28.7
(0.2)
P 		23.8
(-3)
P 		23.8
(-3)
P 		9
C 24.7
(3)
P 		13.2
(-3)
A 		16.7
(-1.2)
A 		23.7
(2.5)
P 		12
avr 25.2
(3) 		16.9
(-3) 		17.4
(-2.6) 		23.5
(1.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 12.6
(-0.7)
A 		10.8
(-1.5)
A 		8.2
(-2.7)
A 		7.4
(-3)
A 		21.2
(3)
P 		17.7
(1.5)
P 		14
B 16.2
(-2.9)
P 		24.6
(0)
P 		15.8
(-3)
P 		16.2
(-2.9)
A 		33.3
(3)
P 		17.8
(-2.3)
P 		18
C 22.4
(3)
P 		12
(-1.2)
P 		12.4
(-1)
A 		7.4
(-3)
A 		19.4
(1.8)
P 		15.5
(0.2)
P 		15
avr 17.1
(-0.1) 		15.8
(-0.7) 		12.1
(-2.2) 		10.3
(-3) 		24.6
(3) 		17
(-0.2) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188302_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15082
Sequence Type Exemplar sequence
Representative Public ID F31F4.6 NCBI
Target Description F31F4.6 /REP_DB=WormBase Gene ID /WP=CE09826 /GEN=srh-266 /TR=O17130 /GB=AAG24084.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070884(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070884 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-266) (srh-266) mRNA, complete cds. 11/11 None
GENEFINDER00000012379 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:664837:665753:1 11/11 None
F31F4.6 ENSEMBL cdna:known chromosome:CEL140:V:664627:665753:1 gene:F31F4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012365 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:664626-665753(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-266
Ensembl F31F4.6
Entrez Gene 191895 Entrez gene
SwissProt O17130 EMBL-EBI
WormBase CE09826 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503285 Serpentine Receptor, class H family member (srh-266) [Caenorhabditis elegans] gb|AAG24084.1| Serpentine receptor, class h protein 266 [Caenorhabditis elegans] 0.0
blast NP_503285 Serpentine Receptor, class H family member (srh-266) [Caenorhabditis elegans] gb|AAG24084.1| Serpentine receptor, class h protein 266 [Caenorhabditis elegans] 1.0E-141
blast CAE57800 Hypothetical protein CBG00824 [Caenorhabditis briggsae] 2.0E-76
blast NP_504942 Serpentine Receptor, class H family member (srh-268) [Caenorhabditis elegans] gb|AAG24017.1| Serpentine receptor, class h protein 268 [Caenorhabditis elegans] 2.0E-73
blast CAE57800 Hypothetical protein CBG00824 [Caenorhabditis briggsae] 1.0E-48
blast CAE56493 Hypothetical protein CBG24210 [Caenorhabditis briggsae] 5.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.4E-112
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503285.1 7 10-31,52-74,84-106,127-149,183-205,230-252,267-286
F31F4.6 7 10-31,52-74,84-106,127-149,183-205,230-252,267-286
GENEFINDER00000012379 5 15-37,57-79,113-135,160-182,197-216
Sequence
Target Sequence 
>C. ELEGANS:188302_AT
atctactttcaactataccctgtccgttgtatttttcattccggctcttctcactgtccc
cgagcagaatatggcaatgaactatgttttacaaaattatctctacctgccgcctgacct
agtaaaacgatcattcatatttgccatcgagttcaaatgggtcgtgtttcctgtcgctac
tgtcgtcctcatttatgcagccgagttaaatgttgtggtagctttactatcgcgtaatat
gaaaaacacaatgaaaatggcaacgtactccaaacaaacggcgatgatgcagaaaaagtt
catacaggcaatgtatatacaggcagccgtattttttctcaatttacaattgccaatttt
gtatacagtactttcccagttcaccgacttttacagccagaccgcaaataacctggtatt
tataattgtctcgctacatggaattgactcaactatcatcatgctatgggctcacaaacc
gtatcgcgagttttgtatgcgagctcttgcaaaacttaaactgccggtcagggtgcgtgt
gctgccaacaagaccaactac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTACTTTCAACTATACCCTGTCC 631 31 399 Antisense
TACCCTGTCCGTTGTATTTTTCATT 603 649 414 Antisense
TCTCACTGTCCCCGAGCAGAATATG 531 613 447 Antisense
TTACAAAATTATCTCTACCTGCCGC 601 681 487 Antisense
TGCCGCCTGACCTAGTAAAACGATC 182 585 506 Antisense
TGTCGTCCTCATTTATGCAGCCGAG 196 557 579 Antisense
GTTGTGGTAGCTTTACTATCGCGTA 207 437 610 Antisense
TGTATACAGTACTTTCCCAGTTCAC 3 561 758 Antisense
GCTATGGGCTCACAAACCGTATCGC 100 303 861 Antisense
TAAACTGCCGGTCAGGGTGCGTGTG 353 639 915 Antisense
GTGTGCTGCCAACAAGACCAACTAC 18 489 935 Antisense
Sequence Source Affymetrix Proprietary Database