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[188300_at] 7TM receptor, sre family

Description C41C4.2 /REP_DB=WormBase Gene ID /WP=CE01517 /GEN=sre-2 /TR=SW:Q09273 /GB=CAA88099.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 05      6grp_cgc > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 64.9
(-1.1)
P 		46
(-3)
A 		76.6
(0.1)
A 		104.6
(3)
A 		59
B 87.2
(3)
P 		76.3
(1.1)
A 		52.6
(-3)
A 		76.3
(1.1)
P 		35
C 83.2
(-1.7)
P 		79.2
(-2.6)
P 		77.2
(-3)
A 		104.9
(3)
P 		28
avr 78.4
(-0.6) 		67.2
(-3) 		68.8
(-2.7) 		95.3
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 145.8
(3)
P 		85
(-0.1)
P 		135.4
(2.5)
P 		82.7
(-0.2)
P 		62.9
(-1.2)
A 		26.9
(-3)
A 		119
B 91.9
(1)
P 		86.3
(0.5)
P 		116.8
(3)
P 		93.4
(1.1)
P 		69.5
(-0.8)
A 		42.3
(-3)
A 		75
C 91.1
(0.3)
P 		110.2
(1.9)
P 		113.8
(2.2)
M 		124.3
(3)
P 		49.7
(-3)
A 		49.4
(-3)
A 		75
avr 109.6
(2.1) 		93.8
(0.9) 		122
(3) 		100.1
(1.4) 		60.7
(-1.5) 		39.5
(-3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 23.6
(3)
P 		10
(-3)
A 		20
(1.4)
A 		15.3
(-0.7)
A 		14
B 27.8
(3)
P 		18.9
(-0.4)
A 		12.2
(-3)
A 		16.3
(-1.4)
P 		16
C 27.5
(3)
P 		22.8
(0.1)
P 		26.9
(2.6)
A 		17.7
(-3)
P 		10
avr 26.3
(3) 		17.2
(-2.5) 		19.7
(-1) 		16.4
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 26.9
(2.2)
P 		30.2
(3)
P 		29.5
(2.8)
P 		21
(0.7)
P 		19
(0.2)
A 		6.6
(-3)
A 		24
B 32
(3)
P 		28.7
(1.8)
P 		28.4
(1.7)
P 		24.7
(0.3)
P 		28.2
(1.6)
A 		15.8
(-3)
A 		16
C 33.8
(3)
P 		33.6
(2.9)
P 		29
(1.4)
M 		25
(0)
P 		16.1
(-3)
A 		16.6
(-2.8)
A 		18
avr 30.9
(3) 		30.8
(3) 		29
(2.4) 		23.6
(0.6) 		21.1
(-0.3) 		13
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188300_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2920
Sequence Type Exemplar sequence
Representative Public ID C41C4.2 NCBI
Target Description C41C4.2 /REP_DB=WormBase Gene ID /WP=CE01517 /GEN=sre-2 /TR=SW:Q09273 /GB=CAA88099.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063297(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063297 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-2) (sre-2) mRNA, complete cds. 11/11 A 
GENEFINDER00000036868 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8100296:8104972:-1 11/11 None
C41C4.2 ENSEMBL cdna:known chromosome:CEL140:II:8100296:8102062:-1 gene:C41C4.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8100292-8105233(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-2
Ensembl C41C4.2
Entrez Gene 174302 Entrez gene
SwissProt Q09273 EMBL-EBI
WormBase CE37883 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE57724 Hypothetical protein CBG00735 [Caenorhabditis briggsae] 0.0
blast CAI46557 Hypothetical protein C41C4.10 [Caenorhabditis elegans] ref|NP_001022022.1| C41C4.10 [Caenorhabditis elegans] sp|Q5FC79|YQGA_CAEEL Hypothetical protein C41C4.10 in chromosome II 1.0E-171
blast 2123261AT chemosensory receptor 1.0E-164
blast CAA88099 Hypothetical protein C41C4.2 [Caenorhabditis elegans] ref|NP_495698.3| Serpentine Receptor, class E (epsilon) family member (sre-2) [Caenorhabditis elegans] sp|Q09273|SRE2_CAEEL Serpentine receptor class epsilon-2 (Protein sre-2) 1.0E-163
blast 2123261AT chemosensory receptor 1.0E-144
blast CAE57724 Hypothetical protein CBG00735 [Caenorhabditis briggsae] 1.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 3.1E-8
Pfam IPR004686 EMBL-EBI Tricarboxylate/iron carrier 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495698.3 6 19-41,54-76,89-111,117-139,179-196,216-235
C41C4.2 6 19-41,54-76,89-111,117-139,179-196,216-235
GENEFINDER00000036868 7 153-175,297-319,408-430,443-465,471-493,533-550,570-589
Sequence
Target Sequence 
>C. ELEGANS:188300_AT
aatcttcgatactgccgtgtggtgcagtcttggtctttgttttaattttgtttcaatatt
tctctatgtaattttattcaattcaaacaaatcaaaaatagagctctgtcaaacaagaga
aataactcaatcttatacattaagccttcgttttcaattaaatgagaacttgaaaataat
gaattggatcaaaaattcaatattagtggtcacttgttttaatactttgctcgctggatt
tctgatcgcgtccaataatgagtatttaaaaaatgattatccggttcttgtcaaatgctg
tcatactttcctgaatttgggaattgctatatatgctcaagtcgtatttttcgttgcaat
ccttgctgatcgtcattttcgtacatattttcttcgttttaaaccaattagagttttcac
aaaaccatttttcgggagaatatttccggaagacttcaaaatcaagaaaattttatcaac
aagtgatgagacaaatgtgtatttctcgaaattgagtctacaatgggatgagcaaattat
tcgaagctctcatgttgttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCTTCGATACTGCCGTGTGGTGC 416 169 1272 Antisense
GGTGCAGTCTTGGTCTTTGTTTTAA 194 501 1292 Antisense
TACATTAAGCCTTCGTTTTCAATTA 660 643 1407 Antisense
ATACTTTGCTCGCTGGATTTCTGAT 127 25 1493 Antisense
GGATTTCTGATCGCGTCCAATAATG 585 509 1507 Antisense
TCCGGTTCTTGTCAAATGCTGTCAT 186 595 1551 Antisense
AATGCTGTCATACTTTCCTGAATTT 257 167 1565 Antisense
AAGTCGTATTTTTCGTTGCAATCCT 615 157 1610 Antisense
TTGCAATCCTTGCTGATCGTCATTT 435 703 1625 Antisense
GCTGATCGTCATTTTCGTACATATT 662 295 1636 Antisense
TATTCGAAGCTCTCATGTTGTTGTG 646 663 1809 Antisense
Sequence Source Affymetrix Proprietary Database