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[188299_at]

Description Y71F9B.5 /REP_DB=WormBase Gene ID /WP=CE25569 /GEN=lin-17 /TR=Q94132 /GB=AAF36028.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 28      6grp_cgc > 03      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 200
1 2 3 4 range
A 481.7
(0.3)
A 		458.8
(-0.8)
A 		414.9
(-3)
A 		536.5
(3)
P 		122
B 336.4
(-3)
A 		426.9
(3)
A 		373.2
(-0.6)
A 		419.6
(2.5)
P 		91
C 483.2
(1.8)
A 		505.6
(3)
A 		388.8
(-3)
A 		435.1
(-0.6)
P 		117
avr 433.8
(0.5) 		463.8
(3) 		392.3
(-3) 		463.7
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 376
1 2 3 4 5 6 range
A 378.8
(0.4)
A 		481.3
(3)
M 		281.8
(-2.1)
A 		245.8
(-3)
A 		343.6
(-0.5)
A 		378.1
(0.4)
A 		236
B 429.8
(3)
A 		412.4
(2.5)
A 		213
(-3)
A 		308.7
(-0.4)
A 		346.1
(0.7)
A 		233.2
(-2.4)
A 		217
C 578.4
(3)
P 		390
(-0)
A 		305.9
(-1.3)
A 		202.1
(-3)
A 		469.3
(1.3)
A 		208.7
(-2.9)
A 		376
avr 462.3
(3) 		427.9
(2) 		266.9
(-2.6) 		252.2
(-3) 		386.3
(0.8) 		273.3
(-2.4) 		210
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 175.4
(3)
A 		99.6
(-1.7)
A 		108.5
(-1.1)
A 		78.5
(-3)
P 		97
B 107.3
(3)
A 		105.4
(2.5)
A 		86.5
(-3)
A 		89.4
(-2.2)
P 		21
C 160
(3)
A 		145.4
(2)
A 		135.5
(1.3)
A 		73.4
(-3)
P 		87
avr 147.6
(3) 		116.8
(0.3) 		110.2
(-0.3) 		80.4
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 69.8
(-2.5)
A 		171.2
(3)
M 		61.4
(-3)
A 		62.3
(-3)
A 		103.7
(-0.7)
A 		92.1
(-1.3)
A 		110
B 149.5
(3)
A 		137.3
(2.3)
A 		51.7
(-3)
A 		81.8
(-1.2)
A 		140.6
(2.5)
A 		87
(-0.8)
A 		98
C 214.4
(3)
P 		119
(-0.3)
A 		77.8
(-1.7)
A 		40.7
(-3)
A 		151.9
(0.8)
A 		69.9
(-2)
A 		174
avr 144.6
(3) 		142.5
(2.8) 		63.6
(-2.9) 		61.6
(-3) 		132.1
(2.1) 		83
(-1.5) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188299_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.219
Sequence Type Exemplar sequence
Representative Public ID Y71F9B.5 NCBI
Target Description Y71F9B.5 /REP_DB=WormBase Gene ID /WP=CE25569 /GEN=lin-17 /TR=Q94132 /GB=AAF36028.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058627(11), NM_001026642(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058627 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-17) (lin-17) mRNA, complete cds. 11/11 A 
NM_001026642 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-17) (lin-17) mRNA, complete cds. 11/11 None
GENEFINDER00000013353 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2707630:2717356:1 11/11 None
SNAP00000013302 ENSEMBL cdna:SNAP chromosome:CEL140:I:2709954:2717356:1 11/11 None
Y71F9B.5b.2 ENSEMBL cdna:known chromosome:CEL140:I:2707565:2717346:1 gene:Y71F9B.5 11/11 None
Y71F9B.5b.1 ENSEMBL cdna:known chromosome:CEL140:I:2707593:2717526:1 gene:Y71F9B.5 11/11 None
Y71F9B.5a ENSEMBL cdna:known chromosome:CEL140:I:2707600:2717550:1 gene:Y71F9B.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2707629-2717356(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y71F9B.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK82924 Abnormal cell lineage protein 17, isoform b [Caenorhabditis elegans] ref|NP_491028.2| abnormal cell LINeage family member (lin-17) [Caenorhabditis elegans] 0.0
blast AAF36028 Abnormal cell lineage protein 17, isoform a [Caenorhabditis elegans] ref|NP_001021813.1| abnormal cell LINeage family member (lin-17) [Caenorhabditis elegans] gb|AAC47301.1| transmembrane receptor LIN-17 0.0
blast CAE60494 Hypothetical protein CBG04112 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000539 EMBL-EBI Frizzled protein 1.0E-126
Pfam IPR000024 EMBL-EBI Frizzled CRD region 1.8E-68
Pfam IPR000539 EMBL-EBI Frizzled protein 1.0E-126
Pfam IPR000024 EMBL-EBI Frizzled CRD region 1.5E-46
Pfam IPR000024 EMBL-EBI Frizzled CRD region 1.1E-16
Pfam IPR000539 EMBL-EBI Frizzled protein 1.0E-126
Pfam IPR000024 EMBL-EBI Frizzled CRD region 5.6E-39
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491028.2 7 206-228,240-262,293-315,328-350,370-392,424-446,474-496
NP_001021813.1 7 206-228,240-262,293-315,328-350,370-392,424-446,474-496
Y71F9B.5b.2 7 206-228,240-262,293-315,328-350,370-392,424-446,474-496
Y71F9B.5b.1 7 206-228,240-262,293-315,328-350,370-392,424-446,474-496
Y71F9B.5a 7 206-228,240-262,293-315,328-350,370-392,424-446,474-496
GENEFINDER00000013353 7 275-297,309-331,362-384,397-419,439-461,493-515,543-565
SNAP00000013302 8 7-29,138-160,172-194,225-247,260-282,302-324,356-378,406-428
Sequence
Target Sequence 
>C. ELEGANS:188299_AT
gaattcgattgcgttgctctggtttgtgattgttccccgaactatttgcattgttattgg
aacatgttttattgttggaggatttgcgagcatgtgcagagagagaattagtttcagaac
aaggggcacagacacatcgaaattggagaaactaatggtgaaaatgggcttcttctgtgc
tttattcatccttcccaacgtcatcgaacttgtctgtcaatgctataaattcatgattct
cacccaatggacccgaatgacaattgactgtaaacaacagtcaggtgcatgtcatcggcc
gacaccgccgcaggctgaaatttacatgaccgccgtaatttccagtctcgccacaggatt
ctcgtgtctgatgtgggtgttgtcggcgaagaccgtcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCGATTGCGTTGCTCTGGTTT 160 325 1113 Antisense
TGCTCTGGTTTGTGATTGTTCCCCG 35 581 1127 Antisense
TGTTCCCCGAACTATTTGCATTGTT 138 563 1143 Antisense
TGAAAATGGGCTTCTTCTGTGCTTT 133 573 1271 Antisense
GTCATCGAACTTGTCTGTCAATGCT 113 467 1312 Antisense
TTCTCACCCAATGGACCCGAATGAC 322 691 1349 Antisense
AACAGTCAGGTGCATGTCATCGGCC 295 135 1388 Antisense
GACACCGCCGCAGGCTGAAATTTAC 512 367 1413 Antisense
ACATGACCGCCGTAATTTCCAGTCT 413 105 1436 Antisense
TCGCCACAGGATTCTCGTGTCTGAT 394 599 1460 Antisense
TGGGTGTTGTCGGCGAAGACCGTCC 244 553 1486 Antisense
Sequence Source Affymetrix Proprietary Database