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[188298_at] 7TM chemoreceptor, str family

Description F21F8.9 /REP_DB=WormBase Gene ID /WP=CE09543 /GEN=str-136 /TR=O01535 /GB=AAC47999.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 34      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 2.8
(-3)
A 		48.1
(3)
A 		5.7
(-2.6)
A 		12.8
(-1.7)
A 		45
B 3.4
(-3)
A 		6.9
(3)
A 		5.2
(0.1)
A 		6.1
(1.6)
A 		4
C 5.4
(-3)
A 		16.4
(3)
A 		8.3
(-1.4)
A 		15
(2.2)
A 		11
avr 3.9
(-3) 		23.8
(3) 		6.4
(-2.2) 		11.3
(-0.8) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 5.3
(-2.1)
A 		2.5
(-3)
A 		20.7
(3)
A 		5.1
(-2.1)
A 		8.1
(-1.2)
A 		5.1
(-2.1)
A 		18
B 29.3
(3)
A 		6.8
(-2)
A 		6.5
(-2.1)
A 		5.6
(-2.3)
A 		4.2
(-2.6)
A 		2.5
(-3)
A 		27
C 5
(-1.9)
A 		5
(-1.9)
A 		2.3
(-3)
A 		9.2
(-0.2)
A 		6
(-1.5)
A 		17.1
(3)
A 		15
avr 13.2
(3) 		4.8
(-3) 		9.8
(0.6) 		6.6
(-1.7) 		6.1
(-2.1) 		8.2
(-0.6) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1
(-3)
A 		10.4
(3)
A 		1.5
(-2.7)
A 		1.9
(-2.4)
A 		9
B 1.1
(-3)
A 		1.7
(3)
A 		1.2
(-2)
A 		1.3
(-1)
A 		1
C 1.8
(-3)
A 		4.7
(3)
A 		2.9
(-0.7)
A 		2.5
(-1.6)
A 		3
avr 1.3
(-3) 		5.6
(3) 		1.9
(-2.2) 		1.9
(-2.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1
(-2.8)
A 		0.9
(-3)
A 		4.5
(3)
A 		1.3
(-2.3)
A 		2.5
(-0.3)
A 		1.2
(-2.5)
A 		4
B 10.2
(3)
A 		2.3
(-2.1)
A 		1.6
(-2.5)
A 		1.5
(-2.6)
A 		1.7
(-2.5)
A 		0.9
(-3)
A 		9
C 1.9
(-1.5)
A 		1.5
(-1.9)
A 		0.6
(-3)
A 		1.9
(-1.5)
A 		1.9
(-1.5)
A 		5.7
(3)
A 		5
avr 4.4
(3) 		1.6
(-3) 		2.2
(-1.7) 		1.6
(-3) 		2
(-2.1) 		2.6
(-0.9) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188298_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11636
Sequence Type Exemplar sequence
Representative Public ID F21F8.9 NCBI
Target Description F21F8.9 /REP_DB=WormBase Gene ID /WP=CE09543 /GEN=str-136 /TR=O01535 /GB=AAC47999.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072736(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072736 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-136) (str-136) mRNA, complete cds. 11/11 None
GENEFINDER00000008560 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8280106:8281252:-1 11/11 None
F21F8.9 ENSEMBL cdna:known chromosome:CEL140:V:8280106:8281520:-1 gene:F21F8.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008550 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8280106-8281521(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-136
Ensembl F21F8.9
Entrez Gene 192009 Entrez gene
SwissProt O01535 EMBL-EBI
WormBase CE09543 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47999 Seven tm receptor protein 136 [Caenorhabditis elegans] ref|NP_505137.1| Seven TM Receptor family member (str-136) [Caenorhabditis elegans] 0.0
blast AAC47999 Seven tm receptor protein 136 [Caenorhabditis elegans] ref|NP_505137.1| Seven TM Receptor family member (str-136) [Caenorhabditis elegans] 1.0E-158
blast AAC47998 Seven tm receptor protein 135 [Caenorhabditis elegans] ref|NP_505138.1| Seven TM Receptor family member (str-135) [Caenorhabditis elegans] 1.0E-116
blast CAE66084 Hypothetical protein CBG11301 [Caenorhabditis briggsae] 1.0E-113
blast AAC47998 Seven tm receptor protein 135 [Caenorhabditis elegans] ref|NP_505138.1| Seven TM Receptor family member (str-135) [Caenorhabditis elegans] 2.0E-88
blast CAE66084 Hypothetical protein CBG11301 [Caenorhabditis briggsae] 2.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505137.1 7 15-34,47-69,89-111,135-157,214-236,257-279,294-312
F21F8.9 7 15-34,47-69,89-111,135-157,214-236,257-279,294-312
GENEFINDER00000008560 5 24-46,65-87,144-166,187-209,224-242
Sequence
Target Sequence 
>C. ELEGANS:188298_AT
tttacgccctctgttattgtatttattatctggtttataatgttttactttggaatgcct
aatattcttgaaaagcaggaatatcttaaaaaagaattcaagatatgttttaacgtggat
tcatcaaaaactccatttgttggtccaatgtattggtctcgtggtgaaaatggagagatt
aattggaaaataacggaggtcattgcttcacaattatgctcttttctttcgatcattagt
tttttagccattttatactgtgcaatcagtatttactcaacaatcaacagtttgcggcac
aacctgagtcctaagatgttagacgtaaaccgacaaatatttaaaatgttatgcatgcag
acaataataccaatgatcacaatgtacacaccagttgctttgtttgcaattcttctgttg
ttcggacaagatataccatatctgggcaacttgacaagctgcagtttggcagtttacccg
gttatcgaaccaattattgcaatgacctgtatatcggcatttcgaagagctactatcaat
gcagtcacctgttcacatagtgtctcacccacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTACGCCCTCTGTTATTGTATTTA 405 673 427 Antisense
ATAACGGAGGTCATTGCTTCACAAT 549 25 616 Antisense
GCTTCACAATTATGCTCTTTTCTTT 549 305 631 Antisense
TGCTCTTTTCTTTCGATCATTAGTT 508 579 643 Antisense
ACAGTTTGCGGCACAACCTGAGTCC 276 105 713 Antisense
TGTACACACCAGTTGCTTTGTTTGC 585 559 809 Antisense
GTTTGCAATTCTTCTGTTGTTCGGA 122 451 828 Antisense
GCAGTTTGGCAGTTTACCCGGTTAT 625 293 887 Antisense
TCGGCATTTCGAAGAGCTACTATCA 135 605 940 Antisense
ATCAATGCAGTCACCTGTTCACATA 326 27 961 Antisense
TGTTCACATAGTGTCTCACCCACAA 501 561 976 Antisense
Sequence Source Affymetrix Proprietary Database