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[188295_at]

Description H14E04.4_rc /REP_DB=WormBase Gene ID /WP=CE20969 /TR=Q9TYP3 /GB=AAD12811.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 55      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 1.8
(-3)
A 		21.8
(0.7)
A 		3.1
(-2.8)
A 		34
(3)
A 		32
B 1.3
(-3)
A 		3.5
(-2.7)
A 		1.4
(-3)
A 		44.9
(3)
A 		44
C 8.2
(-1.1)
A 		2.5
(-3)
A 		13.5
(0.8)
A 		20.1
(3)
A 		18
avr 3.8
(-3) 		9.3
(-1.9) 		6
(-2.5) 		33
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 2.3
(-2.8)
A 		0.9
(-3)
A 		19.7
(-0.4)
A 		3.2
(-2.7)
A 		1.6
(-2.9)
A 		44.2
(3)
A 		43
B 1.7
(-2.7)
A 		1.8
(-2.6)
A 		13.4
(3)
A 		2.1
(-2.5)
A 		1
(-3)
A 		5.4
(-0.9)
A 		12
C 1.7
(-2.8)
A 		21.1
(3)
A 		1.4
(-2.9)
A 		6.5
(-1.4)
A 		1.2
(-3)
A 		2.8
(-2.5)
A 		20
avr 1.9
(-2.8) 		7.9
(-0.6) 		11.5
(0.8) 		3.9
(-2) 		1.3
(-3) 		17.5
(3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.6
(-3)
A 		4.7
(2.6)
A 		0.8
(-2.7)
A 		5
(3)
A 		4
B 0.4
(-2.9)
A 		0.9
(-2.6)
A 		0.3
(-3)
A 		9.6
(3)
A 		9
C 2.7
(0)
A 		0.7
(-3)
A 		4.7
(3)
A 		3.4
(1.1)
A 		4
avr 1.2
(-3) 		2.1
(-1.9) 		1.9
(-2.1) 		6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.4
(-2.9)
A 		0.3
(-3)
A 		4.3
(-0.7)
A 		0.8
(-2.7)
A 		0.5
(-2.9)
A 		10.8
(3)
A 		11
B 0.6
(-2.6)
A 		0.6
(-2.6)
A 		3.2
(3)
A 		0.6
(-2.6)
A 		0.4
(-3)
A 		2
(0.4)
A 		3
C 0.6
(-2.8)
A 		6.4
(3)
A 		0.4
(-3)
A 		1.3
(-2.1)
A 		0.4
(-3)
A 		0.9
(-2.5)
A 		6
avr 0.5
(-2.9) 		2.4
(-0.1) 		2.6
(0.1) 		0.9
(-2.3) 		0.4
(-3) 		4.6
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188295_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28128
Sequence Type Exemplar sequence
Representative Public ID H14E04.4 NCBI
Target Description H14E04.4_rc /REP_DB=WormBase Gene ID /WP=CE20969 /TR=Q9TYP3 /GB=AAD12811.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) H14E04.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
H14E04.4 H14E04.4_rc /REP_DB=WormBase Gene ID /WP=CE20969 /TR=Q9TYP3 /GB=AAD12811.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065146 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2390328-2392104(+) 47.83 83.23
Public Domain and Genome References
Ensembl H14E04.4
Sequence
Target Sequence 
>C. ELEGANS:188295_AT
ttttgctaatttttggtgcacactgtacagtaccccggctttttttcgtggcgagactcc
aaaatttttcaaattttttaaaaacttttttgaaaaattttgaaaattcataacttttgc
agtttttgaggttttttgcttatttttgctgcacaatgtacttaaaaacgtattcttaca
ggaaaaattcaaaaaaaaacaaagttccttcggggcaaattgaaaagtttcgagcaaaac
ctggagcagacgcttaagctccgtgccctgaggggaaagtgaaactttttctggttgttt
agatgggaaaatgagcagaaaacgacatgccagtgggagtgttttgttgctgattccaga
gccttcggtcgtcaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGCTAATTTTTGGTGCACACTG 16 679 61 Antisense
TTGGTGCACACTGTACAGTACCCCG 518 707 73 Antisense
TTTTCGTGGCGAGACTCCAAAATTT 86 673 103 Antisense
TTTTTGCTTATTTTTGCTGCACAAT 438 675 193 Antisense
TTTCGAGCAAAACCTGGAGCAGACG 423 669 288 Antisense
GGAGCAGACGCTTAAGCTCCGTGCC 318 519 303 Antisense
TTAAGCTCCGTGCCCTGAGGGGAAA 149 683 314 Antisense
GAAACTTTTTCTGGTTGTTTAGATG 386 355 341 Antisense
ATGCCAGTGGGAGTGTTTTGTTGCT 429 41 387 Antisense
GTTTTGTTGCTGATTCCAGAGCCTT 688 447 401 Antisense
TTCCAGAGCCTTCGGTCGTCAAAAA 485 701 414 Antisense
Sequence Source Affymetrix Proprietary Database