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[188289_s_at]

Description T24H7.5B /REP_DB=WormBase Gene ID /WP=CE21204 /TR=Q10463 /GB=AAD31557.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ATPase
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 49      6grp_total > 84      4grp_total > 01      6grp_highest_sub > 04_05_06      6grp_cgc > 77      6grp_high1_sub > 04      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1139
1 2 3 4 range
A 2310.7
(-0.3)
P 		1803.3
(-3)
P 		2572.6
(1.1)
P 		2942.5
(3)
P 		1139
B 2083.7
(-3)
P 		2381.7
(-0.1)
P 		2139.1
(-2.5)
P 		2698.9
(3)
P 		615
C 2451.6
(1.7)
P 		1960.7
(-3)
P 		2244.4
(-0.3)
P 		2590.7
(3)
P 		630
avr 2282
(-1) 		2048.6
(-3) 		2318.7
(-0.7) 		2744
(3) 		695

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3662
1 2 3 4 5 6 range
A 3487.5
(-2.8)
P 		3400.3
(-3)
P 		4583.3
(-0.5)
P 		5874.2
(2.2)
P 		6269.7
(3)
P 		5352.4
(1.1)
P 		2869
B 2776.7
(-3)
P 		2935.2
(-2.7)
P 		4228.4
(-0.5)
P 		5590.7
(1.8)
P 		6303.4
(3)
P 		5105.2
(1)
P 		3527
C 2641.6
(-3)
P 		2860
(-2.6)
P 		4928.2
(1.1)
P 		5992.5
(3)
P 		5395.3
(1.9)
P 		5536.4
(2.2)
P 		3351
avr 2968.6
(-3) 		3065.2
(-2.8) 		4580
(0.2) 		5819.1
(2.7) 		5989.5
(3) 		5331.3
(1.7) 		3021
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 450
1 2 3 4 range
A 841.3
(3)
P 		391.5
(-3)
P 		672.5
(0.7)
P 		430.7
(-2.5)
P 		450
B 664.5
(3)
P 		588.2
(0.3)
P 		495.7
(-3)
P 		575.1
(-0.2)
P 		169
C 811.6
(3)
P 		563.7
(-1)
P 		782.2
(2.5)
P 		436.8
(-3)
P 		375
avr 772.5
(3) 		514.5
(-2.3) 		650.1
(0.5) 		480.9
(-3) 		292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1918
1 2 3 4 5 6 range
A 642.9
(-3)
P 		1209.3
(-0.3)
P 		998.2
(-1.3)
P 		1489.8
(1.1)
P 		1891.9
(3)
P 		1303.1
(0.2)
P 		1249
B 966.1
(-3)
P 		977
(-3)
P 		1026.8
(-2.8)
P 		1480.8
(-1.1)
P 		2561
(3)
P 		1903.7
(0.5)
P 		1595
C 979.1
(-2.3)
P 		872.7
(-3)
P 		1254.3
(-0.7)
P 		1205.1
(-1)
P 		1745.9
(2.3)
P 		1853.3
(3)
P 		981
avr 862.7
(-3) 		1019.7
(-2.2) 		1093.1
(-1.9) 		1391.9
(-0.4) 		2066.3
(3) 		1686.7
(1.1) 		1204
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188289_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4751
Sequence Type Exemplar sequence
Representative Public ID T24H7.5B NCBI
Target Description T24H7.5B /REP_DB=WormBase Gene ID /WP=CE21204 /TR=Q10463 /GB=AAD31557.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=ATPase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062843(11), NM_062844(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062843 NCBI Caenorhabditis elegans T24H7.5b (ATPase) mRNA, complete cds. 11/11 A 
NM_062844 NCBI Caenorhabditis elegans T24H7.5c (ATPase) mRNA, complete cds. 11/11 A 
SNAP00000030996 ENSEMBL cdna:SNAP chromosome:CEL140:II:6234536:6235446:-1 11/11 None
GENEFINDER00000031006 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6234536:6236096:-1 11/11 None
T24H7.5b ENSEMBL cdna:known chromosome:CEL140:II:6234441:6244182:-1 gene:T24H7.5 11/11 A 
T24H7.5c.1 ENSEMBL cdna:known chromosome:CEL140:II:6234536:6235454:-1 gene:T24H7.5 11/11 None
T24H7.5c.2 ENSEMBL cdna:known chromosome:CEL140:II:6234536:6236227:-1 gene:T24H7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174031 3 2 NM_062843 172707_x_at (11), 175017_s_at (11), 188289_s_at (11)
NM_062844 175017_s_at (11), 188289_s_at (11)
NM_062845 172707_x_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6234532-6244179(-) 100.0 100.0
Public Domain and Genome References
Ensembl T24H7.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD31557 Hypothetical protein T24H7.5b [Caenorhabditis elegans] ref|NP_495244.1| T24H7.5b [Caenorhabditis elegans] 0.0
blast AAD31556 Hypothetical protein T24H7.5a [Caenorhabditis elegans] ref|NP_495246.1| T24H7.5a [Caenorhabditis elegans] pir||D88175 protein T24H7.5a [imported] - Caenorhabditis elegans 0.0
blast CAE59269 Hypothetical protein CBG02601 [Caenorhabditis briggsae] 0.0
blast AAD31557 Hypothetical protein T24H7.5b [Caenorhabditis elegans] ref|NP_495244.1| T24H7.5b [Caenorhabditis elegans] 1.0E-132
blast AAD31558 Hypothetical protein T24H7.5c [Caenorhabditis elegans] ref|NP_495245.1| T24H7.5c [Caenorhabditis elegans] 1.0E-120
blast AAD31557 Hypothetical protein T24H7.5b [Caenorhabditis elegans] ref|NP_495244.1| T24H7.5b [Caenorhabditis elegans] 1.0E-120
Protein Families
Method ID Description E-Value
ec A10B_HUMAN (O94823) Potential phospholipid-transporting ATPase VB (EC 3.6.3.1) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 4.2E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495244.1 11 91-108,112-129,317-339,364-386,993-1015,1025-1047,1077-1099,1109-1131,1138-1160,1180-1194,1215-1234
NP_495245.1 1 4-21
T24H7.5b 11 91-108,112-129,317-339,364-386,993-1015,1025-1047,1077-1099,1109-1131,1138-1160,1180-1194,1215-1234
T24H7.5c.1 1 4-21
T24H7.5c.2 1 4-21
SNAP00000030996 1 4-21
GENEFINDER00000031006 1 28-47
Sequence
Target Sequence 
>C. ELEGANS:188289_S_AT
atctgtcaccacttcaccaaaaaatctcgacaaaccgttgacagtctactacaaatatca
tttgggaccatatcaaaatgtgatgaatgtgatcggcgaggcaaaacaactgttggcatc
cagcccaacacctgcaacgttcttcggcatctattacgataacccagaagtcaccgattc
ccacttcctccaatctgctgttggagtcgtttttggatcagatggaaatgatttccacag
tgaaaaatattcgaaagatttgactgacaatggctttgagaagttggttctgccaaatgt
cgagagagccgttcaagttactcagccatccactggtggattcgcctctttcttggctct
tgtttggttcacctattcaaccatcagaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGTCACCACTTCACCAAAAAAT 693 33 3753 Antisense
GACAAACCGTTGACAGTCTACTACA 589 365 3781 Antisense
GTGATCGGCGAGGCAAAACAACTGT 239 485 3841 Antisense
AACAACTGTTGGCATCCAGCCCAAC 116 131 3857 Antisense
TGCAACGTTCTTCGGCATCTATTAC 65 577 3885 Antisense
CGATAACCCAGAAGTCACCGATTCC 345 247 3909 Antisense
AATCTGCTGTTGGAGTCGTTTTTGG 337 169 3944 Antisense
GGTTCTGCCAAATGTCGAGAGAGCC 383 507 4038 Antisense
GAGCCGTTCAAGTTACTCAGCCATC 697 383 4058 Antisense
GCCATCCACTGGTGGATTCGCCTCT 95 267 4077 Antisense
GTTCACCTATTCAACCATCAGAAAG 412 445 4119 Antisense
Sequence Source Affymetrix Proprietary Database