[Home] | [Total List]

[188288_s_at] esterase

Description M05D6.4 /REP_DB=WormBase Gene ID /WP=CE03502 /TR=Q21523 /GB=CAA91413.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=esterase
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 95      6grp_total > 66      4grp_total > 13      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1340
1 2 3 4 range
A 1187.1
(0.6)
P 		660.1
(-2.2)
P 		514.6
(-3)
P 		1636.7
(3)
P 		1122
B 1305.1
(0.5)
P 		716
(-2.7)
P 		664.8
(-3)
P 		1757.1
(3)
P 		1092
C 1375.2
(0.7)
P 		621.5
(-2.9)
P 		603.3
(-3)
P 		1854.2
(3)
P 		1251
avr 1289.1
(0.6) 		665.9
(-2.6) 		594.2
(-3) 		1749.3
(3) 		1155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1128
1 2 3 4 5 6 range
A 345.2
(-3)
P 		435.7
(-2.5)
P 		729.2
(-0.9)
P 		654.6
(-1.3)
P 		378.9
(-2.8)
P 		1439.8
(3)
P 		1095
B 355.9
(-3)
P 		375.2
(-2.9)
P 		928.7
(0.7)
P 		527
(-1.9)
P 		397.5
(-2.7)
P 		1287.1
(3)
P 		931
C 336.7
(-2.9)
P 		312.2
(-3)
P 		786.7
(-0.3)
P 		574.6
(-1.5)
P 		404.1
(-2.5)
P 		1361.5
(3)
P 		1049
avr 345.9
(-3) 		374.4
(-2.8) 		814.9
(-0.2) 		585.4
(-1.6) 		393.5
(-2.7) 		1362.8
(3) 		1017
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 432.2
(3)
P 		143.3
(-2.8)
P 		134.5
(-3)
P 		239.6
(-0.9)
P 		298
B 416.2
(3)
P 		176.8
(-2.5)
P 		154.1
(-3)
P 		374.4
(2)
P 		262
C 455.2
(3)
P 		178.7
(-3)
P 		210.3
(-2.3)
P 		312.7
(-0.1)
P 		277
avr 434.5
(3) 		166.3
(-3) 		166.3
(-3) 		308.9
(0.2) 		268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 416
1 2 3 4 5 6 range
A 63.6
(-3)
P 		154.9
(-1.1)
P 		158.8
(-1)
P 		166
(-0.9)
P 		114.3
(-1.9)
P 		350.5
(3)
P 		287
B 123.8
(-3)
P 		124.9
(-3)
P 		225.5
(-1.3)
P 		139.6
(-2.7)
P 		161.5
(-2.4)
P 		480
(3)
P 		356
C 124.8
(-2.5)
P 		95.3
(-3)
P 		200.2
(-1.3)
P 		115.6
(-2.7)
P 		130.8
(-2.4)
P 		455.8
(3)
P 		361
avr 104.1
(-3) 		125
(-2.6) 		194.8
(-1.3) 		140.4
(-2.3) 		135.5
(-2.4) 		428.8
(3) 		325
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188288_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3287
Sequence Type Exemplar sequence
Representative Public ID M05D6.4 NCBI
Target Description M05D6.4 /REP_DB=WormBase Gene ID /WP=CE03502 /TR=Q21523 /GB=CAA91413.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063389(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063389 NCBI Caenorhabditis elegans M05D6.4 (esterase) mRNA, complete cds. 11/11 None
SNAP00000015529 ENSEMBL cdna:SNAP chromosome:CEL140:II:8477950:8480395:-1 11/11 None
GENEFINDER00000015537 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8477950:8480395:-1 11/11 None
M05D6.4 ENSEMBL cdna:known chromosome:CEL140:II:8477932:8480400:-1 gene:M05D6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8477946-8480392(-) 100.0 100.0
Public Domain and Genome References
Gene Title esterase
Ensembl M05D6.4
Entrez Gene 174356 Entrez gene
SwissProt Q21523 EMBL-EBI
WormBase CE03502 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91413 Hypothetical protein M05D6.4 [Caenorhabditis elegans] ref|NP_495790.1| M05D6.4 [Caenorhabditis elegans] 0.0
blast CAE57633 Hypothetical protein CBG00618 [Caenorhabditis briggsae] 0.0
blast CAE59629 Hypothetical protein CBG03042 [Caenorhabditis briggsae] 3.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR001466 EMBL-EBI Beta-lactamase 4.7E-80
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495790.1 1 5-22
M05D6.4 1 5-22
SNAP00000015529 1 5-22
GENEFINDER00000015537 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:188288_S_AT
atattgacttctacattggccttccattgagtgagcaacatcgagtatctcgtatcgaaa
atccaaactttcaaaatgttcttgatgagattttatactctccacgagattttgatgtga
tcaggttcataaaggataaaattaacaatggaacattatcaaagacaactgtgtcaactc
catttgtgcaatttgttggggctatgactctgaacaacccagatcttcatcgtttggaac
aggctgctgttcttggaattggaactgctcgtgcaatggccgaagtttttgaacttttga
gaaatggaaaaattgtgtcggatgatgtaaagcggcaaatgttttttgaaaactatgaaa
tgagtgaagattacattagtggagcaaaagtaccgcgagggcaaggttttatgcttaaag
aatttgaacacaatggaaatcttgtgaaaatgtatggacacagtgggtacggaggacaaa
atattcgaactgattttgaccacgagataacgatcgcctatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTGACTTCTACATTGGCCTTCC 360 17 686 Antisense
ATTGGCCTTCCATTGAGTGAGCAAC 269 3 700 Antisense
GAGTGAGCAACATCGAGTATCTCGT 590 401 714 Antisense
AACTGTGTCAACTCCATTTGTGCAA 465 143 852 Antisense
GGGGCTATGACTCTGAACAACCCAG 376 499 883 Antisense
GAACAACCCAGATCTTCATCGTTTG 291 353 897 Antisense
ACAGGCTGCTGTTCTTGGAATTGGA 367 107 924 Antisense
GAACTGCTCGTGCAATGGCCGAAGT 5 349 947 Antisense
GTGGAGCAAAAGTACCGCGAGGGCA 163 489 1064 Antisense
ATGGACACAGTGGGTACGGAGGACA 706 23 1139 Antisense
GACCACGAGATAACGATCGCCTATT 481 383 1183 Antisense
Sequence Source Affymetrix Proprietary Database