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[188284_at]

Description F19G12.4_rc /REP_DB=WormBase Gene ID /WP=CE07087 /TR=Q19597 /GB=AAG24066.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 55      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 9.5
(-1.5)
A 		29.6
(3)
M 		23.8
(1.7)
A 		2.6
(-3)
A 		27
B 2.4
(-3)
A 		19.1
(3)
A 		13.4
(1)
A 		15.4
(1.7)
A 		17
C 3.3
(-3)
A 		30.3
(3)
A 		19.3
(0.6)
A 		29.7
(2.9)
A 		27
avr 5.1
(-3) 		26.3
(3) 		18.8
(0.9) 		15.9
(0.1) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 17.7
(-0.8)
A 		17.1
(-0.9)
A 		36.3
(3)
A 		7.9
(-2.8)
A 		6.8
(-3)
A 		22.7
(0.2)
A 		30
B 10.2
(-2.2)
A 		13.8
(-1)
A 		14.8
(-0.7)
A 		7.9
(-3)
A 		14.9
(-0.7)
A 		25.9
(3)
A 		18
C 2.8
(-2.8)
A 		19.5
(0.9)
A 		17.1
(0.4)
A 		12.8
(-0.6)
A 		1.8
(-3)
A 		29.1
(3)
A 		27
avr 10.2
(-2.2) 		16.8
(-0) 		22.7
(1.9) 		9.5
(-2.4) 		7.8
(-3) 		25.9
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.5
(0.1)
A 		6.4
(3)
M 		6.2
(2.8)
A 		0.4
(-3)
A 		6
B 0.8
(-3)
A 		4.7
(3)
A 		3.1
(0.5)
A 		3.3
(0.8)
A 		4
C 1.1
(-3)
A 		8.7
(3)
A 		6.7
(1.4)
A 		5
(0.1)
A 		8
avr 1.8
(-3) 		6.6
(3) 		5.3
(1.4) 		2.9
(-1.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3.3
(-1.7)
A 		6.1
(1.2)
A 		7.9
(3)
A 		2
(-3)
A 		2
(-3)
A 		5.5
(0.6)
A 		6
B 3.6
(-1.8)
A 		4.6
(-1)
A 		3.6
(-1.8)
A 		2.1
(-3)
A 		6.1
(0.2)
A 		9.7
(3)
A 		8
C 1
(-2.7)
A 		6
(0.6)
A 		4.3
(-0.6)
A 		2.6
(-1.7)
A 		0.6
(-3)
A 		9.7
(3)
A 		9
avr 2.6
(-2.6) 		5.6
(0.3) 		5.3
(0) 		2.2
(-3) 		2.9
(-2.3) 		8.3
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188284_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28168
Sequence Type Exemplar sequence
Representative Public ID F19G12.4 NCBI
Target Description F19G12.4_rc /REP_DB=WormBase Gene ID /WP=CE07087 /TR=Q19597 /GB=AAG24066.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F19G12.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F19G12.4 F19G12.4_rc /REP_DB=WormBase Gene ID /WP=CE07087 /TR=Q19597 /GB=AAG24066.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075866 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1417298-1417472(-) 100.0 100.0
Public Domain and Genome References
Ensembl F19G12.4
Sequence
Target Sequence 
>C. ELEGANS:188284_AT
gacttcctcgagaacatgtcggatatggctcctcgccagtccgatgtgcattctgattgt
tttcgactgtatgatgagatgaagcttggttcgataatcgaagggtcaccatgtacagaa
aagagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTCCTCGAGAACATGTCGGATA 468 371 30 Antisense
GAACATGTCGGATATGGCTCCTCGC 700 349 41 Antisense
TCGCCAGTCCGATGTGCATTCTGAT 238 599 62 Antisense
GCCAGTCCGATGTGCATTCTGATTG 347 281 64 Antisense
TCCGATGTGCATTCTGATTGTTTTC 424 593 69 Antisense
ATTCTGATTGTTTTCGACTGTATGA 677 9 79 Antisense
TGTTTTCGACTGTATGATGAGATGA 226 561 87 Antisense
GAGATGAAGCTTGGTTCGATAATCG 391 395 105 Antisense
TCGATAATCGAAGGGTCACCATGTA 150 603 120 Antisense
AATCGAAGGGTCACCATGTACAGAA 42 163 125 Antisense
AGGGTCACCATGTACAGAAAAGAGT 261 59 131 Antisense
Sequence Source Affymetrix Proprietary Database