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[188283_at]

Description Y106G6H.3 /REP_DB=WormBase Gene ID /WP=CE20413 /GEN=rpl-30 /TR=Q9XWS4 /GB=CAA21573.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 20      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 09      6grp_total > 32      4grp_total > 25      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13348
1 2 3 4 range
A 29292.9
(-3)
P 		38704.1
(1.7)
P 		37347.8
(1)
P 		41317.4
(3)
P 		12025
B 28934.7
(-3)
P 		34611.1
(1.9)
P 		33541.1
(1)
P 		35925.6
(3)
P 		6991
C 27973.8
(-3)
P 		36821.8
(1)
P 		31935
(-1.2)
P 		41321.9
(3)
P 		13348
avr 28733.8
(-3) 		36712.3
(1.4) 		34274.6
(0.1) 		39521.6
(3) 		10788

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9539
1 2 3 4 5 6 range
A 29614.1
(3)
P 		24830.8
(-0.2)
P 		27083
(1.3)
P 		27004.8
(1.2)
P 		20776.8
(-3)
P 		24324.4
(-0.6)
P 		8837
B 24305.8
(3)
P 		23940.1
(2.5)
P 		22784.4
(0.8)
P 		22169.9
(-0)
P 		20640.4
(-2.2)
P 		20075.1
(-3)
P 		4231
C 22853
(-2.1)
P 		24631
(0.1)
P 		26960.2
(3)
P 		26469.5
(2.4)
P 		23284.9
(-1.5)
P 		22104.8
(-3)
P 		4855
avr 25591
(3) 		24467.3
(1.3) 		25609.2
(3) 		25214.7
(2.4) 		21567.4
(-3) 		22168.1
(-2.1) 		4042
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5082
1 2 3 4 range
A 10665.6
(3)
P 		8401.6
(0.1)
P 		9763.4
(1.8)
P 		6048.1
(-3)
P 		4618
B 9227
(3)
P 		8548.1
(0.4)
P 		7772.2
(-2.6)
P 		7655.8
(-3)
P 		1571
C 9260.1
(0.3)
P 		10586.5
(2.2)
P 		11130.3
(3)
P 		6967.5
(-3)
P 		4163
avr 9717.6
(3) 		9178.7
(1.9) 		9555.3
(2.7) 		6890.5
(-3) 		2827

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3508
1 2 3 4 5 6 range
A 5459.1
(-3)
P 		8831.1
(3)
P 		5898.1
(-2.2)
P 		6849
(-0.5)
P 		6269.5
(-1.6)
P 		5922.2
(-2.2)
P 		3372
B 8457.2
(3)
P 		7968.6
(2)
P 		5532.7
(-3)
P 		5872.1
(-2.3)
P 		8385.9
(2.9)
P 		7485.9
(1)
P 		2925
C 8470.6
(3)
P 		7515.7
(1.2)
P 		6861.8
(-0.1)
P 		5323
(-3)
P 		7534.6
(1.2)
P 		7399.8
(1)
P 		3148
avr 7462.3
(1.2) 		8105.1
(3) 		6097.5
(-2.8) 		6014.7
(-3) 		7396.7
(1) 		6936
(-0.4) 		2090
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188283_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2246
Sequence Type Exemplar sequence
Representative Public ID Y106G6H.3 NCBI
Target Description Y106G6H.3 /REP_DB=WormBase Gene ID /WP=CE20413 /GEN=rpl-30 /TR=Q9XWS4 /GB=CAA21573.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060327(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060327 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-30) (rpl-30) mRNA, complete cds. 11/11 None
GENEFINDER00000001725 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10444386:10444967:1 11/11 None
SNAP00000001703 ENSEMBL cdna:SNAP chromosome:CEL140:I:10444630:10444967:1 9/11 None
Y106G6H.3 ENSEMBL cdna:known chromosome:CEL140:I:10444386:10445003:1 gene:Y106G6H.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10444316-10444898(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol rpl-30
Ensembl Y106G6H.3
Entrez Gene 172921 Entrez gene
SwissProt Q9XWS4 EMBL-EBI
WormBase CE20413 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257753_AT 60S ribosomal protein L30 (RPL30C) at
CANINE:1605178_AT similar to ribosomal protein L30 cfa
CANINE:1599328_AT similar to ribosomal protein L30 cfa
CANINE:1588308_S_AT similar to ribosomal protein L30 cfa
CANINE_2:CFA.5994.2.S1_AT similar to ribosomal protein L30 cfa
CANINE_2:CFA.5994.3.S1_AT similar to ribosomal protein L30 cfa
CANINE_2:CFAAFFX.14059.1.S1_AT similar to ribosomal protein L30 cfa
CANINE_2:CFAAFFX.7225.1.S1_X_AT similar to ribosomal protein L30 cfa
CANINE_2:CFAAFFX.929.1.S1_X_AT similar to ribosomal protein L30 cfa
DROSOPHILA_2:1634313_S_AT Ribosomal protein L30 dm
DROSGENOME1:146467_AT Ribosomal protein L30 dm
CHICKEN:GGA.9375.1.S1_AT ribosomal protein L30 gga
PLASMODIUM_ANOPHELES:200062_S_AT ribosomal protein L30 hs
HG-U133A:200062_S_AT ribosomal protein L30 hs
HG-U133B:200062_S_AT ribosomal protein L30 hs
HG-U133_PLUS_2:200062_S_AT ribosomal protein L30 hs
HG-FOCUS:200062_S_AT ribosomal protein L30 hs
HG-U133A_2:200062_S_AT ribosomal protein L30 hs
U133_X3P:200062_S_AT ribosomal protein L30 hs
HG-U95AV2:31708_AT ribosomal protein L30 hs
HU35KSUBD:RC_C13994_F_AT ribosomal protein L30 hs
U133_X3P:G388034_3P_S_AT ribosomal protein L30 hs
HG-U95C:63603_S_AT ribosomal protein L30 hs
U133_X3P:HS.111222.1.S1_3P_AT Ribosomal protein L30 hs
HG-U133_PLUS_2:228047_AT Ribosomal protein L30 hs
HG-U133B:228047_AT Ribosomal protein L30 hs
HG-U95C:63602_AT Ribosomal protein L30 hs
MOUSE430A_2:1438076_AT ribosomal protein L30 mm
MOE430A:1438076_AT ribosomal protein L30 mm
MOUSE430_2:1438076_AT ribosomal protein L30 mm
MU11KSUBA:K02928_F_AT ribosomal protein L30 mm
MG-U74AV2:98119_AT ribosomal protein L30 mm
MOE430A:1418273_A_AT ribosomal protein L30 mm
MOUSE430A_2:1418273_A_AT ribosomal protein L30 mm
MOUSE430_2:1418273_A_AT ribosomal protein L30 mm
MOE430A:1456266_AT ribosomal protein L30 mm
MOUSE430A_2:1456266_AT ribosomal protein L30 mm
MOUSE430_2:1456266_AT ribosomal protein L30 mm
RG-U34A:RC_AI233749_AT ribosomal protein L30 rn
RG-U34C:RC_AI233363_F_AT ribosomal protein L30 rn
RG-U34C:AA686461_AT ribosomal protein L30 rn
RAE230A:1398774_AT ribosomal protein L30 rn
RAT230_2:1398774_AT ribosomal protein L30 rn
RG-U34A:D84480_S_AT Ribosomal protein L30 rn
RAE230A:1386517_AT Ribosomal protein L30 rn
RAT230_2:1386517_AT Ribosomal protein L30 rn
YEAST_2:1780199_AT Protein component of the large (60S) ribosomal subunit, has similarity to rat L30 ribosomal protein; involved in pre-rRNA processing in the nucleolus; autoregulates splicing of its transcript Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21573 Hypothetical protein Y106G6H.3 [Caenorhabditis elegans] ref|NP_492728.1| Ribosomal Protein, Large subunit family member (rpl-30) [Caenorhabditis elegans] 2.0E-58
blast CAE58940 Hypothetical protein CBG02208 [Caenorhabditis briggsae] 9.0E-48
blast CAA21573 Hypothetical protein Y106G6H.3 [Caenorhabditis elegans] ref|NP_492728.1| Ribosomal Protein, Large subunit family member (rpl-30) [Caenorhabditis elegans] 2.0E-47
blast AAN05584 ribosomal protein L30 [Argopecten irradians] 6.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR004038 EMBL-EBI Ribosomal protein L7Ae/L30e/S12e/Gadd45 2.1E-38
Pfam IPR004038 EMBL-EBI Ribosomal protein L7Ae/L30e/S12e/Gadd45 1.1E-34
Sequence
Target Sequence 
>C. ELEGANS:188283_AT
ggctccagctgctaagccacagaaaaatgctgagaacatcaactcccgactctccatggt
catgaagactggacaatacgtcctcggatacaagcagactctcaaatcccttctcaacgg
aaaggctaagcttgtcatcattgccaacaacactccaccactcagaaagtccgagattga
gtactacgccatgctcgccaaaactggagttcaccactacaacggaaacaacattgagct
cggaaccgcctgtggacgtctcttccgtgtgtgcacccttgcagtcactgatgccggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTCCAGCTGCTAAGCCACAGAAA 567 539 15 Antisense
TCCCGACTCTCCATGGTCATGAAGA 129 597 58 Antisense
GGACAATACGTCCTCGGATACAAGC 616 525 85 Antisense
TACAAGCAGACTCTCAAATCCCTTC 210 643 103 Antisense
GAAAGGCTAAGCTTGTCATCATTGC 447 361 134 Antisense
CACTCCACCACTCAGAAAGTCCGAG 522 191 165 Antisense
GAGATTGAGTACTACGCCATGCTCG 309 397 187 Antisense
ACGCCATGCTCGCCAAAACTGGAGT 436 91 200 Antisense
AACTGGAGTTCACCACTACAACGGA 273 143 216 Antisense
AACATTGAGCTCGGAACCGCCTGTG 270 137 244 Antisense
ACCCTTGCAGTCACTGATGCCGGAG 293 89 289 Antisense
Sequence Source Affymetrix Proprietary Database