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[188280_at] 7TM chemoreceptor, str family

Description C13B7.2 /REP_DB=WormBase Gene ID /WP=CE25775 /GEN=str-120 /TR=Q9UAU8 /GB=AAD14708.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 17      6grp_cgc > 80      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 7.8
(-3)
A 		41.3
(3)
A 		18.7
(-1)
A 		18.6
(-1.1)
A 		34
B 19.8
(-1.1)
A 		9.1
(-3)
A 		23.7
(-0.4)
A 		43.3
(3)
A 		34
C 14
(-3)
A 		25.3
(-1.8)
A 		20.5
(-2.3)
A 		71.7
(3)
A 		58
avr 13.9
(-3) 		25.2
(-0.8) 		21
(-1.6) 		44.5
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 33.2
(2.9)
A 		33.6
(3)
A 		27.9
(1.8)
A 		9.9
(-1.8)
A 		4.1
(-3)
A 		8.9
(-2)
A 		30
B 5.4
(-2.8)
A 		6.2
(-2.6)
A 		28.9
(3)
A 		4.4
(-3)
A 		17.4
(0.2)
A 		5.5
(-2.7)
A 		25
C 6.4
(3)
A 		5.6
(-3)
A 		5.9
(-0.7)
A 		5.6
(-3)
A 		5.8
(-1.5)
A 		5.9
(-0.7)
A 		1
avr 15
(0.5) 		15.1
(0.6) 		20.9
(3) 		6.6
(-3) 		9.1
(-2) 		6.8
(-2.9) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.8
(-2.9)
A 		9
(3)
A 		4.9
(-0.9)
A 		2.7
(-3)
A 		6
B 6.3
(0.5)
A 		2.2
(-3)
A 		5.5
(-0.2)
A 		9.2
(3)
A 		7
C 4.6
(-3)
A 		7.3
(-0.8)
A 		7.1
(-1)
A 		12.1
(3)
A 		8
avr 4.6
(-3) 		6.2
(-0.2) 		5.8
(-0.9) 		8
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 6.1
(-0.3)
A 		11.9
(3)
A 		6.1
(-0.3)
A 		2.5
(-2.3)
A 		1.2
(-3)
A 		2.2
(-2.4)
A 		11
B 1.9
(-2.3)
A 		2.1
(-2.1)
A 		7
(2.9)
A 		1.2
(-3)
A 		7.1
(3)
A 		2.1
(-2.1)
A 		6
C 2.4
(3)
A 		1.7
(-0.2)
A 		1.5
(-1.2)
A 		1.1
(-3)
A 		1.9
(0.7)
A 		2
(1.2)
A 		1
avr 3.5
(0.2) 		5.2
(3) 		4.9
(2.5) 		1.6
(-3) 		3.4
(-0) 		2.1
(-2.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188280_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15189
Sequence Type Exemplar sequence
Representative Public ID C13B7.2 NCBI
Target Description C13B7.2 /REP_DB=WormBase Gene ID /WP=CE25775 /GEN=str-120 /TR=Q9UAU8 /GB=AAD14708.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071266(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071266 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-120) (str-120) mRNA, complete cds. 11/11 A 
GENEFINDER00000043327 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2539912:2545891:1 11/11 None
C13B7.2 ENSEMBL cdna:known chromosome:CEL140:V:2431633:2434553:1 gene:C13B7.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2431632-2434553(+) 100.0 100.0
chrV:2539911-2542832(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-120
Ensembl C13B7.2
Entrez Gene 192001 Entrez gene
SwissProt Q9UAU8 EMBL-EBI
WormBase CE25775 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14708 Seven tm receptor protein 120 [Caenorhabditis elegans] ref|NP_503667.1| Seven TM Receptor family member (str-120) [Caenorhabditis elegans] 0.0
blast AAD14707 Serpentine receptor, class t protein 1 [Caenorhabditis elegans] ref|NP_503695.1| Serpentine Receptor, class T family member (srt-2) [Caenorhabditis elegans] ref|NP_503668.1| Serpentine Receptor, class T family member (srt-1) [Caenorhabditis elegans] gb|AAF60589.1| Serpentine receptor, class t protein 2 [Caenorhabditis elegans] 0.0
blast AAD14708 Seven tm receptor protein 120 [Caenorhabditis elegans] ref|NP_503667.1| Seven TM Receptor family member (str-120) [Caenorhabditis elegans] 1.0E-175
blast AAG24113 Serpentine receptor, class t protein 3 [Caenorhabditis elegans] ref|NP_504175.2| Serpentine Receptor, class T family member (srt-3) [Caenorhabditis elegans] 1.0E-115
blast NP_503694 Y45G12C.6 [Caenorhabditis elegans] gb|AAF60582.1| Hypothetical protein Y45G12C.6 [Caenorhabditis elegans] 1.0E-104
blast NP_503693 Y45G12C.10 [Caenorhabditis elegans] gb|AAF60577.2| Hypothetical protein Y45G12C.10 [Caenorhabditis elegans] 1.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 8.6E-66
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 5.0E-64
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 6.5E-116
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503667.1 7 10-29,42-64,89-111,131-153,205-227,248-270,285-307
C13B7.2 7 10-29,42-64,89-111,131-153,205-227,248-270,285-307
GENEFINDER00000043327 15 10-29,42-64,89-111,131-153,205-227,248-270,285-307,346-365,385-407,420-442,457-479,502-524,550-572,593-615,625-642
Sequence
Target Sequence 
>C. ELEGANS:188280_AT
gttttctatatctacaactccaccggctcactagaatttttctggaaagattgcctagga
atggccgtcgtttatattattctctccatatcaatttccacaataatctacttttccctg
aacatattccgaactgtgtatcgccacacaaaacatcgaaaaagcaaaaagaactgggaa
attcatcggcagctattccagacgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTCTATATCTACAACTCCACCG 43 449 562 Antisense
CCACCGGCTCACTAGAATTTTTCTG 584 273 581 Antisense
AGATTGCCTAGGAATGGCCGTCGTT 392 65 609 Antisense
GGCCGTCGTTTATATTATTCTCTCC 513 539 624 Antisense
TATTCTCTCCATATCAATTTCCACA 198 665 639 Antisense
ACAATAATCTACTTTTCCCTGAACA 128 115 661 Antisense
CTACTTTTCCCTGAACATATTCCGA 598 223 669 Antisense
CATATTCCGAACTGTGTATCGCCAC 82 215 684 Antisense
GAACTGTGTATCGCCACACAAAACA 260 349 692 Antisense
CTGGGAAATTCATCGGCAGCTATTC 318 241 735 Antisense
TTCATCGGCAGCTATTCCAGACGCT 517 687 743 Antisense
Sequence Source Affymetrix Proprietary Database