[Home] | [Total List]

[188279_at] mucb

Description F22B7.6 /REP_DB=WormBase Gene ID /WP=CE00159 /TR=SW:P34409 /GB=AAA65458.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=mucb
Cluster 6grp_total > 77      4grp_total > 20      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 63.6
(-1)
A 		34.3
(-3)
A 		44.8
(-2.3)
A 		122.4
(3)
A 		88
B 23.6
(-1.1)
A 		53.8
(1.7)
A 		3.5
(-3)
A 		68
(3)
P 		65
C 93.9
(3)
A 		90.3
(2.6)
A 		33.4
(-3)
A 		82.5
(1.9)
P 		61
avr 60.4
(0.1) 		59.5
(0) 		27.2
(-3) 		91
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 495
1 2 3 4 5 6 range
A 38.9
(-2.9)
A 		32.7
(-3)
A 		70
(-2.2)
P 		80.4
(-2)
P 		120
(-1.2)
P 		320.1
(3)
P 		287
B 55.9
(-2.6)
A 		48
(-2.6)
A 		19.6
(-3)
A 		99.5
(-2)
P 		110.2
(-1.9)
P 		505.7
(3)
P 		486
C 27.9
(-2.8)
A 		56
(-2.4)
P 		10.9
(-3)
A 		79.1
(-2.1)
P 		122.3
(-1.6)
P 		479.8
(3)
P 		469
avr 40.9
(-2.9) 		45.6
(-2.8) 		33.5
(-3) 		86.3
(-2.2) 		117.5
(-1.7) 		435.2
(3) 		402
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 23.1
(3)
A 		7.4
(-3)
A 		11.7
(-1.4)
A 		17.9
(1)
A 		16
B 7.5
(-0.1)
A 		13.3
(2.5)
A 		0.8
(-3)
A 		14.5
(3)
P 		14
C 31.1
(3)
A 		25.9
(1.4)
A 		11.6
(-3)
A 		13.9
(-2.3)
P 		20
avr 20.6
(3) 		15.5
(0.6) 		8
(-3) 		15.4
(0.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 186
1 2 3 4 5 6 range
A 7.2
(-3)
A 		11.6
(-2.6)
A 		15.2
(-2.3)
P 		20.4
(-1.9)
P 		36.2
(-0.5)
P 		77.9
(3)
P 		71
B 19.5
(-2.5)
A 		16
(-2.6)
A 		4.8
(-3)
A 		26.4
(-2.3)
P 		44.8
(-1.7)
P 		188.6
(3)
P 		184
C 10.3
(-2.7)
A 		17.1
(-2.5)
P 		2.8
(-3)
A 		15.9
(-2.5)
P 		39.6
(-1.6)
P 		160.6
(3)
P 		158
avr 12.3
(-2.8) 		14.9
(-2.7) 		7.6
(-3) 		20.9
(-2.4) 		40.2
(-1.5) 		142.4
(3) 		135
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188279_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8034
Sequence Type Exemplar sequence
Representative Public ID F22B7.6 NCBI
Target Description F22B7.6 /REP_DB=WormBase Gene ID /WP=CE00159 /TR=SW:P34409 /GB=AAA65458.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=mucb
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066498(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066498 NCBI Caenorhabditis elegans F22B7.6 (mucb) mRNA, complete cds. 11/11 None
SNAP00000003830 ENSEMBL cdna:SNAP chromosome:CEL140:III:8626726:8628399:-1 10/11 None
F22B7.6 ENSEMBL cdna:known chromosome:CEL140:III:8626624:8628472:-1 gene:F22B7.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000003847 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8626618-8628394(-) 100.0 100.0
Public Domain and Genome References
Gene Title mucb
Gene Symbol polk-1
Ensembl F22B7.6
Entrez Gene 176209 Entrez gene
SwissProt P34409 EMBL-EBI
WormBase CE00159 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.14805.1.S1_S_AT similar to DNA polymerase kappa (DINB protein) (DINP) cfa
CHICKEN:GGA.3291.1.S1_AT polymerase (DNA directed) kappa gga
HG-U133_PLUS_2:223260_S_AT polymerase (DNA directed) kappa hs
HG-U133B:223260_S_AT polymerase (DNA directed) kappa hs
HU35KSUBA:HUM_ALU_AT polymerase (DNA directed) kappa hs
HU35KSUBB:HUM_ALU_AT polymerase (DNA directed) kappa hs
HU35KSUBC:HUM_ALU_AT polymerase (DNA directed) kappa hs
HU35KSUBD:HUM_ALU_AT polymerase (DNA directed) kappa hs
HUGENEFL:HUM_ALU_AT polymerase (DNA directed) kappa hs
HC-G110:HUM_ALU_AT polymerase (DNA directed) kappa hs
HU35KSUBB:RC_H68499_AT polymerase (DNA directed) kappa hs
HU35KSUBB:RC_AA129697_AT polymerase (DNA directed) kappa hs
HU35KSUBD:RC_AA287878_AT polymerase (DNA directed) kappa hs
HG-U133B:223261_AT polymerase (DNA directed) kappa hs
HG-U133_PLUS_2:223261_AT polymerase (DNA directed) kappa hs
U133_X3P:G6463739_3P_A_AT polymerase (DNA directed) kappa hs
U133_X3P:G6681759_3P_AT polymerase (DNA directed) kappa hs
U133_X3P:HS2.135756.2.S1_3P_X_AT polymerase (DNA directed) kappa hs
U133_X3P:HS2.135756.2.S1_3P_AT polymerase (DNA directed) kappa hs
U133_X3P:1555317_3P_AT polymerase (DNA directed) kappa hs
HG-U133_PLUS_2:1555317_AT polymerase (DNA directed) kappa hs
HG-U95B:58997_R_AT polymerase (DNA directed) kappa hs
HG-U95D:78928_I_AT polymerase (DNA directed) kappa hs
HG-U95D:78930_R_AT polymerase (DNA directed) kappa hs
HG-U95D:78932_AT polymerase (DNA directed) kappa hs
HG-U95D:81646_AT Polymerase (DNA directed) kappa hs
MOUSE430_2:1449483_AT polymerase (DNA directed), kappa mm
MOUSE430A_2:1449483_AT polymerase (DNA directed), kappa mm
MOE430A:1449483_AT polymerase (DNA directed), kappa mm
MOUSE430A_2:1419501_AT polymerase (DNA directed), kappa mm
MOE430A:1419501_AT polymerase (DNA directed), kappa mm
MOUSE430_2:1419501_AT polymerase (DNA directed), kappa mm
MU11KSUBA:AA273206_AT polymerase (DNA directed), kappa mm
MG-U74AV2:97651_AT polymerase (DNA directed), kappa mm
MG-U74AV2:162307_AT polymerase (DNA directed), kappa mm
MU19KSUBA:TC25761_AT Polymerase (DNA directed), kappa, mRNA (cDNA clone IMAGE:3157844) mm
RAE230B:1385678_AT polymerase (DNA directed) kappa rn
RAT230_2:1385678_AT polymerase (DNA directed) kappa rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6281 DNA repair inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA65458 Hypothetical protein F22B7.6 [Caenorhabditis elegans] ref|NP_498899.1| F22B7.6 [Caenorhabditis elegans] sp|P34409|YLW6_CAEEL Hypothetical protein F22B7.6 in chromosome III 0.0
blast CAE75018 Hypothetical protein CBG22922 [Caenorhabditis briggsae] 0.0
blast AAH76794 Polk-prov protein [Xenopus laevis] 1.0E-102
Protein Domains
Database ID Description E-Value
Pfam IPR001126 EMBL-EBI UMUC-like DNA-repair protein 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:188279_AT
ggtcgtgtatgcgaagctcaactgaaagcaatggatattcaaactgttggtgatatgaat
ctgaagaagaacctataccctttgtgtttcacgcctctctcacaagaatctttccttcga
acggctctcggactgccaggtcgtccatctgaatcggatccacgaagaaaaagcatttca
gttgagagaactttttctccaacttcggatttcaacatcctcctagaagagcatcaagaa
atctgtagaatgcttgaagaagatgttcgtaaatcaggaattgtcggaggaaaaactgta
actctaaaattaaaattatcttcattcgatgttctcacaagatcgttgacaccttctgat
gtggtgaagtcacttgaagatattcaaaagttctcactggagttgttggaaaaagaaaaa
ggaaaagaaattcgattgttaggagtcagattatcacaattgatatttgaagaagatgag
aaaaaaagaagcaaaacggtatgtcagaaaattttgaaaaccataactgataaatataaa
gcaatgttttcttctattttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCGTGTATGCGAAGCTCAACTGA 435 501 970 Antisense
GAAGAAGAACCTATACCCTTTGTGT 204 337 1032 Antisense
ACAAGAATCTTTCCTTCGAACGGCT 69 113 1071 Antisense
GGTCGTCCATCTGAATCGGATCCAC 695 501 1108 Antisense
GAGAGAACTTTTTCTCCAACTTCGG 675 389 1153 Antisense
AACTTCGGATTTCAACATCCTCCTA 278 139 1170 Antisense
AACATCCTCCTAGAAGAGCATCAAG 338 137 1183 Antisense
TTATCTTCATTCGATGTTCTCACAA 216 681 1285 Antisense
ACAAGATCGTTGACACCTTCTGATG 607 113 1306 Antisense
AAAGTTCTCACTGGAGTTGTTGGAA 272 123 1356 Antisense
TAAAGCAATGTTTTCTTCTATTTTT 407 641 1506 Antisense
Sequence Source Affymetrix Proprietary Database