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[188278_s_at] Troponin

Description T20B3.2 /REP_DB=WormBase Gene ID /WP=CE20087 /TR=Q9XUN9 /GB=CAB04737.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Troponin
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 22      6grp_total > 22      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 61      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1865
1 2 3 4 range
A 1783.3
(3)
P 		1756
(2.9)
P 		1395.2
(1.6)
P 		161.9
(-3)
P 		1621
B 2026.5
(3)
P 		1792.1
(2.2)
P 		1498.7
(1.2)
P 		300.9
(-3)
P 		1726
C 1962.8
(3)
P 		1600.4
(1.8)
P 		1350.9
(0.9)
P 		193.9
(-3)
P 		1769
avr 1924.2
(3) 		1716.2
(2.3) 		1414.9
(1.2) 		218.9
(-3) 		1705

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1869
1 2 3 4 5 6 range
A 2161.8
(1.9)
P 		2494.8
(3)
P 		1923.9
(1.2)
P 		1509.8
(-0.2)
P 		1462.8
(-0.3)
P 		625.7
(-3)
P 		1869
B 2128
(2.3)
P 		1974.1
(1.7)
P 		2311.2
(3)
P 		1471.1
(-0.2)
P 		1522.4
(0)
P 		721.2
(-3)
P 		1590
C 2163.1
(2.7)
P 		1995.7
(2.1)
P 		2249.7
(3)
P 		1349.5
(-0.4)
P 		1767.6
(1.2)
P 		641.2
(-3)
P 		1609
avr 2151
(3) 		2154.9
(3) 		2161.6
(3) 		1443.5
(0.1) 		1584.3
(0.7) 		662.7
(-3) 		1499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 626
1 2 3 4 range
A 649.3
(3)
P 		381.2
(0.4)
P 		364.7
(0.3)
P 		23.7
(-3)
P 		626
B 646.2
(3)
P 		442.6
(0.9)
P 		347.3
(-0.1)
P 		64.1
(-3)
P 		582
C 649.8
(3)
P 		460.1
(1.2)
P 		470.8
(1.3)
P 		32.7
(-3)
P 		617
avr 648.4
(3) 		428
(0.8) 		394.3
(0.5) 		40.2
(-3) 		608

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 735
1 2 3 4 5 6 range
A 398.5
(-1)
P 		887.3
(3)
P 		419
(-0.8)
P 		382.9
(-1.1)
P 		441.4
(-0.6)
P 		152.3
(-3)
P 		735
B 740.4
(3)
P 		657.1
(1.9)
P 		561.2
(0.7)
P 		389.6
(-1.5)
P 		618.6
(1.5)
P 		268.9
(-3)
P 		472
C 801.8
(3)
P 		609
(1)
P 		572.6
(0.7)
P 		271.4
(-2.4)
P 		572
(0.7)
P 		214.6
(-3)
P 		587
avr 646.9
(2.2) 		717.8
(3) 		517.6
(0.6) 		348
(-1.4) 		544
(0.9) 		211.9
(-3) 		506
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188278_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14179
Sequence Type Exemplar sequence
Representative Public ID T20B3.2 NCBI
Target Description T20B3.2 /REP_DB=WormBase Gene ID /WP=CE20087 /TR=Q9XUN9 /GB=CAB04737.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Troponin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074849(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074849 NCBI Caenorhabditis elegans T20B3.2 (Troponin) mRNA, complete cds. 11/11 None
SNAP00000028349 ENSEMBL cdna:SNAP chromosome:CEL140:V:16836367:16837690:-1 11/11 None
GENEFINDER00000028362 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16836346:16837690:-1 11/11 None
T20B3.2 ENSEMBL cdna:known chromosome:CEL140:V:16836241:16837709:-1 gene:T20B3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16836366-16837690(-) 95.4 100.0
Public Domain and Genome References
Gene Title Troponin
Gene Symbol tni-3
Ensembl T20B3.2
Entrez Gene 180127 Entrez gene
SwissProt Q9XUN9 EMBL-EBI
WormBase CE20087 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04737 Hypothetical protein T20B3.2 [Caenorhabditis elegans] ref|NP_507250.1| T20B3.2 [Caenorhabditis elegans] dbj|BAD89380.1| troponin I 3 [Caenorhabditis elegans] sp|Q9XUN9|TNNI3_CAEEL Troponin I 3 (TnI 3) 1.0E-101
blast CAE56607 Hypothetical protein CBG24362 [Caenorhabditis briggsae] 3.0E-94
blast AAG01564 Uncoordinated protein 27 [Caenorhabditis elegans] ref|NP_509488.1| UNCoordinated family member (unc-27) [Caenorhabditis elegans] 6.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR001978 EMBL-EBI Troponin 1.2E-33
Sequence
Target Sequence 
>C. ELEGANS:188278_S_AT
aacttctcatgatgaaagccgccgaggacttgaagcaacagcaaatgctcaaggagcaag
aacgtcagaagacccttcagcagcgtactatcccacttccagacgtcgactcgatcaatg
atcagggacaactcttgaagatctatgaggatatgttcgccagagtttgtgctcttgagg
aggagaagttcgatatcaacttcggagtatcccagactgaggcagagatcaatcagttga
ctattcaagttaatgacttgagaggaaagtttgtgaagccaacattgaagaaggtgtcca
agtacgacaacaagttcaagtcatccggagaagttaaggaaaaatcaaacttccgcaaca
acctgaaagtggtcaaaaaggagacggacctcgacgaaatcatggcaaagaagaagggaa
ccgccgacggaaaaccagaatggtccaagaaagagaagaaggaagaagaggctgcaccag
tggaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTCTCATGATGAAAGCCGCCGA 366 137 200 Antisense
GCCGCCGAGGACTTGAAGCAACAGC 370 285 217 Antisense
GTCAGAAGACCCTTCAGCAGCGTAC 26 465 263 Antisense
ACTTCCAGACGTCGACTCGATCAAT 111 105 294 Antisense
CGATCAATGATCAGGGACAACTCTT 605 245 311 Antisense
AGATCTATGAGGATATGTTCGCCAG 262 67 338 Antisense
GTTCGCCAGAGTTTGTGCTCTTGAG 206 441 354 Antisense
ATCAACTTCGGAGTATCCCAGACTG 300 27 394 Antisense
GTATCCCAGACTGAGGCAGAGATCA 21 455 406 Antisense
AAAATCAAACTTCCGCAACAACCTG 647 133 540 Antisense
AAGAAGAGGCTGCACCAGTGGAACT 239 133 662 Antisense
Sequence Source Affymetrix Proprietary Database