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[188277_at] tctex-1

Description T05C12.5 /REP_DB=WormBase Gene ID /WP=CE02317 /TR=Q22226 /GB=CAA91306.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=tctex-1
Cluster 6grp_total > 96      4grp_total > 25      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 15.7
(-2)
A 		10.4
(-3)
A 		43.1
(3)
A 		38.1
(2.1)
A 		33
B 3.3
(-3)
A 		24.9
(3)
A 		10.8
(-0.9)
A 		21
(1.9)
A 		22
C 18
(-1.2)
A 		40.4
(1.3)
A 		1.8
(-3)
A 		55.2
(3)
A 		53
avr 12.3
(-3) 		25.2
(-0) 		18.6
(-1.5) 		38.1
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 4.4
(-3)
A 		6.3
(-2.8)
A 		31.6
(-0.4)
A 		21.7
(-1.3)
A 		29.6
(-0.6)
A 		67.3
(3)
A 		63
B 33.4
(1.2)
A 		20.9
(-0.7)
A 		5.4
(-3)
A 		23.3
(-0.3)
A 		45.5
(3)
A 		41.7
(2.4)
A 		40
C 4.9
(-2.6)
A 		1.3
(-3)
A 		49.9
(3)
A 		22.5
(-0.4)
A 		50.1
(3)
A 		37
(1.4)
A 		49
avr 14.2
(-2.3) 		9.5
(-3) 		29
(-0) 		22.5
(-1) 		41.7
(1.9) 		48.7
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.7
(-0.7)
A 		2.3
(-3)
A 		11.3
(3)
A 		5.6
(-0.8)
A 		9
B 1
(-3)
A 		6.1
(3)
A 		2.5
(-1.2)
A 		4.5
(1.1)
A 		5
C 5.9
(-0.1)
A 		11.6
(3)
A 		0.6
(-3)
A 		9.3
(1.7)
A 		11
avr 4.2
(-3) 		6.7
(3) 		4.8
(-1.6) 		6.5
(2.5) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.8
(-3)
A 		2.2
(-2.5)
A 		6.9
(-0.7)
A 		5.5
(-1.2)
A 		8.9
(0.1)
A 		16.4
(3)
A 		16
B 11.6
(0.6)
A 		7
(-1)
A 		1.3
(-3)
A 		6.2
(-1.3)
A 		18.5
(3)
A 		15.5
(2)
A 		17
C 1.8
(-2.5)
A 		0.4
(-3)
A 		12.7
(1.7)
A 		4.5
(-1.4)
A 		16.2
(3)
A 		12.4
(1.6)
A 		16
avr 4.7
(-2.2) 		3.2
(-3) 		7
(-1) 		5.4
(-1.9) 		14.5
(2.8) 		14.8
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188277_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3381
Sequence Type Exemplar sequence
Representative Public ID T05C12.5 NCBI
Target Description T05C12.5 /REP_DB=WormBase Gene ID /WP=CE02317 /TR=Q22226 /GB=CAA91306.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=tctex-1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063317(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063317 NCBI Caenorhabditis elegans T05C12.5 (tctex-1) mRNA, complete cds. 11/11 None
T05C12.5 ENSEMBL cdna:known chromosome:CEL140:II:8181307:8182230:1 gene:T05C12.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002112 6/11 Cross Hyb Matching Probes None
GENEFINDER00000002119 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8181303-8182227(+) 100.0 100.0
Public Domain and Genome References
Gene Title tctex-1
Ensembl T05C12.5
Entrez Gene 188123 Entrez gene
SwissProt Q22226 EMBL-EBI
WormBase CE02317 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91306 Hypothetical protein T05C12.5 [Caenorhabditis elegans] ref|NP_495718.1| T05C12.5 [Caenorhabditis elegans] 7.0E-86
blast CAE57715 Hypothetical protein CBG00723 [Caenorhabditis briggsae] 4.0E-42
blast CAG00875 unnamed protein product [Tetraodon nigroviridis] 2.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR005334 EMBL-EBI Tctex-1 family 6.6E-49
Sequence
Target Sequence 
>C. ELEGANS:188277_AT
gtcaatttcggatacggaacgccatcaacattacacaatttctgtgtgtccggtgctcca
aactgacacttctacaacttcttctgtagcaaagcggcaaattgaatcaaaaaacgctca
gcttttgagacaattgattgaaaagaaaaataagaaactcaaaaagaaagtctattcaaa
tgccgaagaacaagaaattgatttaattattcaaaaatcatttgattcaataattggtaa
aactccatattctccattcaaaatgtctgattggatgagcaagatgatccaaacaatttc
ggataatttagtgaagctcaatggaagcaaaaagtttttggttcattgtactatttctgc
aaaaaccgataatcttgcaatttgcacggccaacatgtgctcctgggatactacgaagga
tactgcatactactcggaatggatgtctaaaactatcttcggtgctgtcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAATTTCGGATACGGAACGCCAT 526 455 15 Antisense
GGAACGCCATCAACATTACACAATT 149 531 30 Antisense
CACAATTTCTGTGTGTCCGGTGCTC 37 195 48 Antisense
GTGTCCGGTGCTCCAAACTGACACT 558 485 60 Antisense
AAACTGACACTTCTACAACTTCTTC 264 127 74 Antisense
ACTTCTTCTGTAGCAAAGCGGCAAA 95 103 91 Antisense
TTTGGTTCATTGTACTATTTCTGCA 39 667 351 Antisense
CTTGCAATTTGCACGGCCAACATGT 608 215 388 Antisense
GCCAACATGTGCTCCTGGGATACTA 457 277 403 Antisense
GAAGGATACTGCATACTACTCGGAA 188 335 429 Antisense
CTAAAACTATCTTCGGTGCTGTCCA 196 227 461 Antisense
Sequence Source Affymetrix Proprietary Database