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[188269_s_at]

Description K02E10.2 /REP_DB=WormBase Gene ID /WP=CE04694 /GEN=hid-1 /TR=Q21136 /GB=AAC47068.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      6grp_highest_nonorm > 71      6grp_total > 16      4grp_total > 30      6grp_highest_sub > De      6grp_cgc > 13      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 370.1
(0.6)
P 		258.9
(-3)
A 		281.3
(-2.3)
A 		445.1
(3)
M 		186
B 289.2
(3)
P 		275.1
(1.9)
P 		227.4
(-1.7)
P 		210
(-3)
M 		79
C 374.9
(3)
P 		321
(-0.2)
P 		273.8
(-3)
P 		306.8
(-1)
A 		101
avr 344.7
(3) 		285
(-1.3) 		260.8
(-3) 		320.6
(1.3) 		84

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 496.8
(3)
P 		304.9
(-2.1)
P 		276.7
(-2.8)
P 		270.2
(-3)
P 		324.2
(-1.6)
P 		284.2
(-2.6)
P 		227
B 393.4
(3)
P 		345.4
(1.1)
P 		243.7
(-3)
P 		287.6
(-1.2)
P 		302.5
(-0.6)
P 		302.5
(-0.6)
P 		150
C 368.7
(2.7)
P 		377.9
(3)
P 		259.3
(-1.4)
P 		330.4
(1.2)
P 		216.3
(-3)
P 		274
(-0.9)
P 		162
avr 419.6
(3) 		342.7
(0.1) 		259.9
(-3) 		296.1
(-1.6) 		281
(-2.2) 		286.9
(-2) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 134.8
(3)
P 		56.2
(-3)
A 		73.5
(-1.7)
A 		65.2
(-2.3)
M 		79
B 92.2
(3)
P 		67.9
(-0.1)
P 		52.7
(-2)
P 		44.8
(-3)
M 		47
C 124.1
(3)
P 		92.3
(0.4)
P 		95.4
(0.6)
P 		51.7
(-3)
A 		72
avr 117
(3) 		72.1
(-1.3) 		73.9
(-1.1) 		53.9
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 91.6
(0.9)
P 		108.5
(3)
P 		60.3
(-3)
P 		68.5
(-2)
P 		97.8
(1.7)
P 		69.2
(-1.9)
P 		48
B 136.9
(3)
P 		115
(1.3)
P 		59.2
(-3)
P 		76.2
(-1.7)
P 		122.9
(1.9)
P 		112.8
(1.1)
P 		78
C 136.7
(3)
P 		115.3
(1.2)
P 		66
(-3)
P 		66.4
(-3)
P 		70
(-2.7)
P 		91.7
(-0.8)
P 		71
avr 121.7
(3) 		112.9
(2.1) 		61.8
(-3) 		70.4
(-2.1) 		96.9
(0.5) 		91.2
(-0.1) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188269_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18092
Sequence Type Exemplar sequence
Representative Public ID K02E10.2 NCBI
Target Description K02E10.2 /REP_DB=WormBase Gene ID /WP=CE04694 /GEN=hid-1 /TR=Q21136 /GB=AAC47068.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029577(11), NM_001029578(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029577 NCBI Caenorhabditis elegans High temperature-Induced Dauer formation family member (hid-1) (hid-1) mRNA, complete cds. 11/11 None
NM_001029578 NCBI Caenorhabditis elegans High temperature-Induced Dauer formation family member (hid-1) (hid-1) mRNA, complete cds. 11/11 None
SNAP00000017098 ENSEMBL cdna:SNAP chromosome:CEL140:X:2489083:2493302:1 11/11 None
GENEFINDER00000017105 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2489083:2494048:1 11/11 None
K02E10.2a ENSEMBL cdna:known chromosome:CEL140:X:2489041:2494331:1 gene:K02E10.2 11/11 A 
K02E10.2b ENSEMBL cdna:known chromosome:CEL140:X:2489083:2494268:1 gene:K02E10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2489082-2494048(+) 100.0 100.0
Public Domain and Genome References
Ensembl K02E10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC47068 High temperature-induced dauer formation protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024748.1| High temperature-Induced Dauer formation family member (hid-1) [Caenorhabditis elegans] gb|AAL55425.1| HID-1 [Caenorhabditis elegans] 0.0
blast AAP68937 High temperature-induced dauer formation protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024749.1| High temperature-Induced Dauer formation family member (hid-1) [Caenorhabditis elegans] 0.0
blast CAE58868 Hypothetical protein CBG02098 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:188269_S_AT
tatcaacggatgctgcttccatcgcgaaaaccttatcaggacgaaaaagtaaatctgcta
atcgtgacgagatggtagatcagctgaagtccccaacctctaccgctccaccggaaatcc
cagcagctgatgctcccgcagcacagacattaggaggagtgagcacaacgacgggacttg
cagcaacgccagctcttgcttccatgacaggaaatgttggaaactgggaagaacggccgg
agtcttcgcaagataacgagtggatagcaacacaagaatgggccgatgcatggaagtcga
aacttcctctgcagactatcatgagattgctccaagtgttggtgccgcaagttgaaaaaa
tttgcatcgataaaggcctcaccgatgagagcgagattctgaaattccttcaacatggaa
ctcttgtgggacttcttccagtaccacacccaattgtaatcagaagatatcaaacgaata
ttggcacaaatcactggttccgcatctacatgtgggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCAACGGATGCTGCTTCCATCGC 250 661 1607 Antisense
GGTAGATCAGCTGAAGTCCCCAACC 225 503 1680 Antisense
GGAAATCCCAGCAGCTGATGCTCCC 284 527 1719 Antisense
GCACAACGACGGGACTTGCAGCAAC 292 317 1769 Antisense
GGAAGAACGGCCGGAGTCTTCGCAA 403 529 1833 Antisense
TCGAAACTTCCTCTGCAGACTATCA 151 601 1903 Antisense
GATTGCTCCAAGTGTTGGTGCCGCA 165 435 1931 Antisense
TCTTGTGGGACTTCTTCCAGTACCA 122 617 2028 Antisense
TCCAGTACCACACCCAATTGTAATC 539 587 2043 Antisense
TATTGGCACAAATCACTGGTTCCGC 289 665 2085 Antisense
CTGGTTCCGCATCTACATGTGGGGA 281 241 2100 Antisense
Sequence Source Affymetrix Proprietary Database