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[188267_at]

Description Y47D3A.23 /REP_DB=WormBase Gene ID /WP=CE24334 /GEN=gly-9 /TR=Q9U2C4 /GB=CAB57897.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 08      4grp_total > 11      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 32.9
(-2.1)
A 		70.2
(2.1)
A 		25
(-3)
A 		78.5
(3)
P 		54
B 35.3
(-3)
A 		56.2
(-0.3)
A 		58.3
(0)
A 		81.2
(3)
A 		46
C 90.8
(1.4)
A 		25
(-3)
A 		29.2
(-2.7)
A 		115.2
(3)
M 		90
avr 53
(-1.3) 		50.5
(-1.6) 		37.5
(-3) 		91.6
(3) 		54

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 109.8
(3)
A 		35.3
(-1.8)
A 		15.9
(-3)
A 		57.1
(-0.4)
A 		46.5
(-1)
A 		41.2
(-1.4)
A 		94
B 36.7
(-1)
P 		34.5
(-1.2)
A 		78.4
(3)
A 		41
(-0.6)
A 		31.7
(-1.4)
A 		15.3
(-3)
A 		63
C 42.5
(0.5)
A 		55.6
(3)
A 		50.9
(2.1)
A 		54.6
(2.8)
A 		24.3
(-3)
A 		51.6
(2.2)
A 		31
avr 63
(3) 		41.8
(-1.4) 		48.4
(-0) 		50.9
(0.5) 		34.2
(-3) 		36
(-2.6) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 12
(0.8)
A 		15.2
(3)
A 		6.5
(-3)
A 		11.5
(0.4)
P 		9
B 11.3
(-3)
A 		13.9
(-0.4)
A 		13.5
(-0.8)
A 		17.3
(3)
A 		6
C 30.1
(3)
A 		7.2
(-3)
A 		10.2
(-2.2)
A 		19.4
(0.2)
M 		23
avr 17.8
(3) 		12.1
(-1.4) 		10.1
(-3) 		16.1
(1.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 20.2
(3)
A 		12.5
(0.2)
A 		3.5
(-3)
A 		14.5
(1)
A 		14
(0.8)
A 		10
(-0.7)
A 		17
B 12.8
(0.2)
P 		11.5
(-0.4)
A 		19
(3)
A 		10.9
(-0.7)
A 		12.9
(0.2)
A 		5.7
(-3)
A 		13
C 15.8
(2)
A 		17
(2.8)
A 		12.9
(0.2)
A 		11
(-1)
A 		7.9
(-3)
A 		17.3
(3)
A 		9
avr 16.3
(3) 		13.7
(0.1) 		11.8
(-2.1) 		12.1
(-1.8) 		11.6
(-2.3) 		11
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188267_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7489
Sequence Type Exemplar sequence
Representative Public ID Y47D3A.23 NCBI
Target Description Y47D3A.23 /REP_DB=WormBase Gene ID /WP=CE24334 /GEN=gly-9 /TR=Q9U2C4 /GB=CAB57897.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027705(11), NM_001027706(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027705 NCBI Caenorhabditis elegans Y47D3A.23a (Y47D3A.23) mRNA, complete cds. 11/11 None
NM_001027706 NCBI Caenorhabditis elegans Y47D3A.23b (Y47D3A.23) mRNA, complete cds. 11/11 None
SNAP00000007218 ENSEMBL cdna:SNAP chromosome:CEL140:III:11279631:11285995:-1 11/11 None
GENEFINDER00000007291 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11279631:11290442:-1 10/11 None
Y47D3A.23a ENSEMBL cdna:known chromosome:CEL140:III:11279012:11285995:-1 gene:Y47D3A.23 11/11 None
Y47D3A.23b ENSEMBL cdna:known chromosome:CEL140:III:11279631:11290457:-1 gene:Y47D3A.23 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11279626-11285991(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y47D3A.23
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB57897 Hypothetical protein Y47D3A.23a [Caenorhabditis elegans] ref|NP_001022876.1| Y47D3A.23a [Caenorhabditis elegans] sp|Q9U2C4|GALT9_CAEEL Probable N-acetylgalactosaminyltransferase 9 (Protein-UDP acetylgalactosaminyltransferase 9) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 9) (pp-GaNTase 9) 0.0
blast AAC13679 GLY9 [Caenorhabditis elegans] 0.0
blast CAE67649 Hypothetical protein CBG13209 [Caenorhabditis briggsae] 0.0
blast CAI46621 Hypothetical protein Y47D3A.23b [Caenorhabditis elegans] ref|NP_001022877.1| Y47D3A.23b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 2.6E-8
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 9.0E-31
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 2.6E-8
Pfam IPR002110 EMBL-EBI Ankyrin 2.9E-4
Pfam IPR002110 EMBL-EBI Ankyrin 1.1
Pfam IPR002110 EMBL-EBI Ankyrin 5.5E-5
Pfam IPR002110 EMBL-EBI Ankyrin 6.6
Pfam IPR002110 EMBL-EBI Ankyrin 0.064
Pfam IPR002110 EMBL-EBI Ankyrin 6.7E-7
Pfam IPR002110 EMBL-EBI Ankyrin 0.11
Pfam IPR002110 EMBL-EBI Ankyrin 24.0
Pfam IPR001173 EMBL-EBI Glycosyl transferase, family 2 1.5E-28
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.5E-5
Pfam IPR000772 EMBL-EBI Ricin B lectin domain 2.6E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022876.1 1 13-30
Y47D3A.23a 1 13-30
SNAP00000007218 1 13-30
Sequence
Target Sequence 
>C. ELEGANS:188267_AT
ttggagatttaactgcacggcatgaactcaggaaaaggctgaattgcaagccgtttaaat
ggtttttggataatattgccaaagggaaattcattatggatgaggatgtcgttgcctatg
gagcgcttcacacagtggtcagcggaacgagaatgtgcaccgataccctacaaagagacg
aaaaaatgtcacaattgctcggcgttttccattgtcagggaaaaggaagctctccgcagc
taatgtccctatcaaaagaaggaaatcttcgacgagagaatacgtgtgcttctgaagaaa
atggaaatattcggatgaaaacttgctcgaaaaaagcacaatttaacgagcgttgggctt
atgagaataaaatgattcgaaatctgaaaagtggaaaatgcatgtcaacagccaacttga
agcccggcgacaatgcaatcgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGAGATTTAACTGCACGGCATGA 544 701 1247 Antisense
GGATGAGGATGTCGTTGCCTATGGA 307 513 1344 Antisense
GAGCGCTTCACACAGTGGTCAGCGG 122 387 1367 Antisense
GAACGAGAATGTGCACCGATACCCT 633 347 1391 Antisense
GTGCACCGATACCCTACAAAGAGAC 176 481 1401 Antisense
AAATGTCACAATTGCTCGGCGTTTT 699 119 1430 Antisense
CTCGGCGTTTTCCATTGTCAGGGAA 60 233 1444 Antisense
CAGGGAAAAGGAAGCTCTCCGCAGC 244 207 1462 Antisense
CGCAGCTAATGTCCCTATCAAAAGA 304 255 1481 Antisense
CAACAGCCAACTTGAAGCCCGGCGA 630 189 1652 Antisense
AAGCCCGGCGACAATGCAATCGTTG 112 149 1666 Antisense
Sequence Source Affymetrix Proprietary Database