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[188266_at]

Description R09F10.9 /REP_DB=WormBase Gene ID /WP=CE23911 /GEN=cip-1 /TR=Q9TY06 /GB=AAD34655.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 25      6grp_total_sub > Hat      6grp_cgc > 64      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 4.7
(-2.4)
A 		22.2
(3)
A 		2.6
(-3)
A 		11.5
(-0.3)
A 		20
B 5.3
(-3)
A 		31.1
(1)
A 		43.6
(3)
A 		42.2
(2.8)
A 		38
C 2.7
(-3)
A 		8.4
(-2.5)
A 		19.3
(-1.6)
A 		73.2
(3)
A 		71
avr 4.2
(-3) 		20.6
(-0.4) 		21.8
(-0.2) 		42.3
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 4.8
(-3)
A 		22.6
(1.4)
A 		20.3
(0.8)
A 		11.3
(-1.4)
A 		29.2
(3)
A 		26.3
(2.3)
A 		24
B 18.6
(1.8)
A 		8
(-2)
A 		14.4
(0.3)
A 		5.2
(-3)
A 		22
(3)
A 		10.2
(-1.2)
A 		17
C 3.9
(-2.7)
A 		44.8
(3)
A 		5.8
(-2.4)
A 		35.7
(1.7)
A 		11.8
(-1.6)
A 		1.8
(-3)
A 		43
avr 9.1
(-3) 		25.1
(3) 		13.5
(-1.4) 		17.4
(0.1) 		21
(1.5) 		12.8
(-1.6) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 1.7
(-1.5)
A 		4.8
(3)
A 		0.7
(-3)
A 		1.7
(-1.5)
A 		4
B 1.7
(-3)
A 		7.7
(1.3)
A 		10.1
(3)
A 		9
(2.2)
A 		8
C 0.9
(-3)
A 		2.4
(-2.2)
A 		6.7
(0.1)
A 		12.3
(3)
A 		11
avr 1.4
(-3) 		5
(0.4) 		5.8
(1.2) 		7.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.9
(-3)
A 		8
(2.4)
A 		4.4
(-0.3)
A 		2.9
(-1.5)
A 		8.8
(3)
A 		6.4
(1.2)
A 		8
B 6.5
(1.1)
A 		2.7
(-2)
A 		3.5
(-1.3)
A 		1.4
(-3)
A 		8.9
(3)
A 		3.8
(-1.1)
A 		8
C 1.4
(-2.6)
A 		13.7
(3)
A 		1.5
(-2.6)
A 		7.2
(0)
A 		3.8
(-1.5)
A 		0.6
(-3)
A 		13
avr 2.9
(-3) 		8.1
(3) 		3.1
(-2.8) 		3.8
(-2) 		7.2
(2) 		3.6
(-2.2) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188266_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16554
Sequence Type Exemplar sequence
Representative Public ID R09F10.9 NCBI
Target Description R09F10.9 /REP_DB=WormBase Gene ID /WP=CE23911 /GEN=cip-1 /TR=Q9TY06 /GB=AAD34655.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077001(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077001 NCBI Caenorhabditis elegans CEll Death abnormality family member (ced-13) (ced-13) mRNA, complete cds. 11/11 None
GENEFINDER00000002578 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8299056:8299801:-1 11/11 None
R09F10.9 ENSEMBL cdna:known chromosome:CEL140:X:8299056:8299403:-1 gene:R09F10.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002568 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8299054-8299402(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ced-13
Ensembl R09F10.9
Entrez Gene 191625 Entrez gene
SwissProt Q9TY06 EMBL-EBI
WormBase CE23911 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509402 CEll Death abnormality family member (ced-13) [Caenorhabditis elegans] gb|AAD34655.1| Cell death abnormality protein 13 [Caenorhabditis elegans] 5.0E-50
blast NP_509402 CEll Death abnormality family member (ced-13) [Caenorhabditis elegans] gb|AAD34655.1| Cell death abnormality protein 13 [Caenorhabditis elegans] 7.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509402.1 1 7-29
R09F10.9 1 7-29
GENEFINDER00000002578 1 73-95
Sequence
Target Sequence 
>C. ELEGANS:188266_AT
gatgtcgtacaagcgtgatggatatttttcaattgtgtcaagctgcctaattttttgtct
acactttctcccgctgttgtctattaggaccaaattaagctccctgtttatcacttctct
cgcaaataatgcttgcaactcaaacaccgttgaatataatattggcagaaaactgacagt
tatgtgcgacgagtttgactctgaactgatgtcctacaaagaagaaaaatcatttgtgaa
atttctaggctcaggattcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTCGTACAAGCGTGATGGATAT 246 409 15 Antisense
TTTTCAATTGTGTCAAGCTGCCTAA 256 675 40 Antisense
AGCTGCCTAATTTTTTGTCTACACT 415 81 55 Antisense
TTTCTCCCGCTGTTGTCTATTAGGA 605 669 79 Antisense
ATTAGGACCAAATTAAGCTCCCTGT 313 11 97 Antisense
ATTAAGCTCCCTGTTTATCACTTCT 323 13 108 Antisense
TATCACTTCTCTCGCAAATAATGCT 261 657 123 Antisense
TAATGCTTGCAACTCAAACACCGTT 204 635 141 Antisense
AGTTATGTGCGACGAGTTTGACTCT 366 63 192 Antisense
GTTTGACTCTGAACTGATGTCCTAC 639 451 207 Antisense
GAAATTTCTAGGCTCAGGATTCAAG 643 361 252 Antisense
Sequence Source Affymetrix Proprietary Database