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[188264_at] ATPase

Description F32D1.1 /REP_DB=WormBase Gene ID /WP=CE09865 /TR=O16299 /GB=AAB65351.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ATPase
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 28      4grp_high_8_8 > 34      6grp_highest_nonorm > 81      6grp_total > 18      4grp_total > 37      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 177
1 2 3 4 range
A 317.4
(3)
P 		226.7
(-0.6)
M 		166.8
(-3)
A 		281
(1.5)
P 		151
B 280.6
(3)
P 		217.7
(-0.6)
P 		175.2
(-3)
M 		191
(-2.1)
M 		105
C 271.5
(3)
P 		253.6
(2.2)
P 		186.7
(-0.9)
P 		140.2
(-3)
P 		131
avr 289.8
(3) 		232.7
(-0) 		176.2
(-3) 		204.1
(-1.5) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 357.7
(3)
P 		267.5
(-0.4)
P 		196.5
(-3)
P 		255.9
(-0.8)
P 		245.1
(-1.2)
P 		277.3
(0)
P 		161
B 334.9
(3)
P 		208.8
(-3)
P 		251.9
(-0.9)
P 		238.1
(-1.6)
P 		248.9
(-1.1)
P 		245.3
(-1.3)
P 		126
C 393
(3)
P 		287
(-1.4)
P 		269.8
(-2.2)
P 		271.9
(-2.1)
P 		273.3
(-2)
P 		250
(-3)
P 		143
avr 361.9
(3) 		254.4
(-2.3) 		239.4
(-3) 		255.3
(-2.2) 		255.8
(-2.2) 		257.5
(-2.1) 		123
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 115.6
(3)
P 		49.2
(-2.3)
M 		43.6
(-2.8)
A 		41.1
(-3)
P 		75
B 89.5
(3)
P 		53.8
(-1.4)
P 		40.6
(-3)
M 		40.7
(-3)
M 		49
C 89.9
(3)
P 		72.9
(1.5)
P 		65.1
(0.8)
P 		23.6
(-3)
P 		66
avr 98.3
(3) 		58.6
(-0.8) 		49.8
(-1.6) 		35.1
(-3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 65.9
(-0.3)
P 		95.1
(3)
P 		42.8
(-3)
P 		64.9
(-0.5)
P 		73.9
(0.6)
P 		67.5
(-0.2)
P 		52
B 116.5
(3)
P 		69.5
(-2.1)
P 		61.2
(-3)
P 		63.1
(-2.8)
P 		101.1
(1.3)
P 		91.5
(0.3)
P 		55
C 145.7
(3)
P 		87.6
(-0.8)
P 		68.7
(-2.1)
P 		54.7
(-3)
P 		88.4
(-0.8)
P 		83.7
(-1.1)
P 		91
avr 109.4
(3) 		84.1
(0.1) 		57.6
(-3) 		60.9
(-2.6) 		87.8
(0.5) 		80.9
(-0.3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188264_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15135
Sequence Type Exemplar sequence
Representative Public ID F32D1.1 NCBI
Target Description F32D1.1 /REP_DB=WormBase Gene ID /WP=CE09865 /TR=O16299 /GB=AAB65351.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ATPase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071796(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071796 NCBI Caenorhabditis elegans F32D1.1 (ATPase) mRNA, complete cds. 11/11 A 
SNAP00000007311 ENSEMBL cdna:SNAP chromosome:CEL140:V:4341441:4355303:-1 11/11 None
GENEFINDER00000007334 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4341441:4345810:-1 11/11 None
F32D1.1 ENSEMBL cdna:known chromosome:CEL140:V:4341253:4345864:-1 gene:F32D1.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4341440-4345810(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATPase
Ensembl F32D1.1
Entrez Gene 178829 Entrez gene
SwissProt O16299 EMBL-EBI
WormBase CE09865 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257781_AT spastin ATPase, putative at
CANINE:1597920_AT similar to fidgetin-like 1 cfa
CANINE:1585149_AT similar to fidgetin-like 1 cfa
CANINE_2:CFA.5796.1.A1_AT similar to fidgetin-like 1 cfa
CANINE_2:CFA.5796.1.A1_S_AT similar to fidgetin-like 1 cfa
CANINE_2:CFA.6012.1.A1_AT similar to fidgetin-like 1 cfa
CANINE_2:CFAAFFX.6000.1.S1_AT similar to fidgetin-like 1 cfa
DROSOPHILA_2:1624312_AT dm
DROSGENOME1:141769_AT dm
CHICKEN:GGAAFFX.11489.1.S1_AT fidgetin-like 1 gga
CHICKEN:GGAAFFX.8311.1.S1_S_AT fidgetin-like 1 gga
U133_X3P:HS2.137516.1.S1_3P_S_AT fidgetin-like 1 hs
U133_X3P:HS.137516.0.S2_3P_AT fidgetin-like 1 hs
HG-U133_PLUS_2:1552921_A_AT fidgetin-like 1 hs
HG-U133_PLUS_2:222843_AT fidgetin-like 1 hs
HG-U133B:222843_AT fidgetin-like 1 hs
HG-U95E:76871_AT fidgetin-like 1 hs
MG-U74AV2:96569_AT fidgetin-like 1 mm
MOUSE430A_2:1460746_AT fidgetin-like 1 mm
MOE430A:1460746_AT fidgetin-like 1 mm
MOUSE430_2:1460746_AT fidgetin-like 1 mm
MU11KSUBA:AA266298_AT fidgetin-like 1 mm
MG-U74AV2:160648_AT fidgetin-like 1 mm
MOE430A:1422430_AT fidgetin-like 1 mm
MOUSE430A_2:1422430_AT fidgetin-like 1 mm
MOUSE430_2:1422430_AT fidgetin-like 1 mm
MU19KSUBC:TC36919_AT Fidgetin-like 1 (Fignl1), mRNA mm
RAE230B:1398638_AT fidgetin-like 1 (predicted) rn
RAT230_2:1398638_AT fidgetin-like 1 (predicted) rn
RG-U34B:RC_AI045011_AT Fidgetin-like 1 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65351 Hypothetical protein F32D1.1 [Caenorhabditis elegans] ref|NP_504197.1| F32D1.1 [Caenorhabditis elegans] 0.0
blast CAE74191 Hypothetical protein CBG21866 [Caenorhabditis briggsae] 0.0
blast AAB65353 Hypothetical protein F32D1.3 [Caenorhabditis elegans] ref|NP_504200.1| F32D1.3 [Caenorhabditis elegans] 0.0
blast AAT46049 fidgetin-like 1 [Rattus norvegicus] gb|AAT46048.1| fidgetin-like 1 [Rattus norvegicus] ref|NP_001011913.1| fidgetin-like 1 (predicted) [Rattus norvegicus] ref|XP_573663.1| PREDICTED: fidgetin-like 1 (predicted) [Rattus norvegicus] 8.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.3E-78
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.3E-78
Pfam IPR006721 EMBL-EBI Mitochondrial ATP synthase epsilon chain 9.2E-16
Pfam IPR001440 EMBL-EBI TPR repeat 3.3E-5
Pfam IPR001440 EMBL-EBI TPR repeat 0.1
Pfam IPR001440 EMBL-EBI TPR repeat 0.0019
Pfam IPR001440 EMBL-EBI TPR repeat 1.9E-6
Pfam IPR001440 EMBL-EBI TPR repeat 0.076
Pfam IPR001440 EMBL-EBI TPR repeat 4.7E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000007311 5 21-43,58-77,98-117,140-162,174-196
Sequence
Target Sequence 
>C. ELEGANS:188264_AT
aaaagcttgttcgtgctctgttctcagttgctcgtctgaaacttccgagtgttatcttca
tcgatgagatcgactcgttactatcatcccggtcggaatcggaacacgaatcttcacggc
gcatcaagacagagttcctggtacagttggatggtgtgaatacggctccagatgaacggc
ttcttgtattgggtgccacaaatcggccacaagagttggatgaagctgctcgtcgacgct
tccagaagcgactgtacattgcgcttccggagccagagtcgcgcacacaaattgtgcaga
atctacttgtaggcacgcgtcatgatatcacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGCTTGTTCGTGCTCTGTTCTC 109 133 1193 Antisense
TCTGTTCTCAGTTGCTCGTCTGAAA 138 609 1209 Antisense
GAAACTTCCGAGTGTTATCTTCATC 290 357 1230 Antisense
GAGATCGACTCGTTACTATCATCCC 284 397 1258 Antisense
CTATCATCCCGGTCGGAATCGGAAC 573 223 1273 Antisense
GAATCGGAACACGAATCTTCACGGC 578 327 1288 Antisense
ACGGCGCATCAAGACAGAGTTCCTG 332 95 1308 Antisense
GGCTCCAGATGAACGGCTTCTTGTA 323 539 1356 Antisense
TTGGGTGCCACAAATCGGCCACAAG 419 707 1381 Antisense
AAGCGACTGTACATTGCGCTTCCGG 108 147 1438 Antisense
GTAGGCACGCGTCATGATATCACAA 190 457 1501 Antisense
Sequence Source Affymetrix Proprietary Database