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[188263_at] ARD1

Description ZK945.5 /REP_DB=WormBase Gene ID /WP=CE24745 /TR=SW:Q09623 /GB=CAA88443.3 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ARD1
Cluster 6grp_total > 64      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 45.8
(-0.2)
A 		5.4
(-3)
A 		19.2
(-2)
A 		92.1
(3)
A 		87
B 41.1
(-0.2)
A 		7
(-2.6)
A 		2.1
(-3)
A 		85.6
(3)
A 		84
C 39.2
(-2.3)
A 		56
(-1.6)
A 		22.3
(-3)
A 		168.2
(3)
P 		146
avr 42
(-1.4) 		22.8
(-2.5) 		14.5
(-3) 		115.3
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 6.1
(-3)
A 		37.8
(-0.5)
A 		79.5
(2.7)
P 		61.5
(1.3)
P 		22.9
(-1.7)
A 		82.9
(3)
A 		77
B 40.5
(-2.9)
A 		56.1
(-1.2)
A 		94.6
(3)
P 		39.2
(-3)
A 		75.3
(0.9)
P 		69.9
(0.3)
P 		55
C 14.5
(-3)
A 		39.2
(-0.8)
A 		50.8
(0.3)
A 		67.5
(1.8)
P 		39.8
(-0.7)
A 		81.2
(3)
M 		67
avr 20.4
(-3) 		44.4
(-0.5) 		75
(2.7) 		56.1
(0.7) 		46
(-0.3) 		78
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 16.7
(3)
A 		1.2
(-3)
A 		5
(-1.5)
A 		13.5
(1.8)
A 		16
B 13.1
(1.3)
A 		1.7
(-2.6)
A 		0.5
(-3)
A 		18.2
(3)
A 		18
C 13
(-1.5)
A 		16.1
(-0.6)
A 		7.8
(-3)
A 		28.4
(3)
P 		21
avr 14.3
(0.8) 		6.3
(-2.3) 		4.4
(-3) 		20
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 1.1
(-3)
A 		13.4
(0.9)
A 		17.3
(2.1)
P 		15.6
(1.6)
P 		6.9
(-1.2)
A 		20.2
(3)
A 		19
B 14.1
(-1.9)
A 		18.7
(-0.5)
A 		23
(0.7)
P 		10.4
(-3)
A 		30.6
(3)
P 		26.1
(1.7)
P 		20
C 5.4
(-3)
A 		12
(-1.2)
A 		12.9
(-0.9)
A 		13.6
(-0.7)
P 		12.9
(-0.9)
A 		27.2
(3)
M 		22
avr 6.9
(-3) 		14.7
(-0.3) 		17.7
(0.7) 		13.2
(-0.9) 		16.8
(0.4) 		24.5
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188263_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3960
Sequence Type Exemplar sequence
Representative Public ID ZK945.5 NCBI
Target Description ZK945.5 /REP_DB=WormBase Gene ID /WP=CE24745 /TR=SW:Q09623 /GB=CAA88443.3 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ARD1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063779(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063779 NCBI Caenorhabditis elegans ZK945.5 (ARD1) mRNA, complete cds. 11/11 None
SNAP00000015335 ENSEMBL cdna:SNAP chromosome:CEL140:II:10103024:10105601:-1 10/11 None
GENEFINDER00000015347 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10103024:10105607:-1 10/11 None
ZK945.5 ENSEMBL cdna:known chromosome:CEL140:II:10104526:10105607:-1 gene:ZK945.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10104522-10105604(-) 97.34 100.0
Public Domain and Genome References
Gene Title ARD1
Ensembl ZK945.5
Entrez Gene 3565242 Entrez gene
SwissProt Q09623 EMBL-EBI
WormBase CE24745 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88443 Hypothetical protein ZK945.5 [Caenorhabditis elegans] ref|NP_496180.1| ZK945.5 [Caenorhabditis elegans] sp|Q09623|YS85_CAEEL Hypothetical RING finger protein ZK945.5 in chromosome II 1.0E-130
blast CAA88438 Hypothetical protein ZK945.4 [Caenorhabditis elegans] ref|NP_496179.2| ZK945.4 [Caenorhabditis elegans] 1.0E-130
blast Q09381 Hypothetical protein ZK945.4 in chromosome II 1.0E-127
blast CAA88443 Hypothetical protein ZK945.5 [Caenorhabditis elegans] ref|NP_496180.1| ZK945.5 [Caenorhabditis elegans] sp|Q09623|YS85_CAEEL Hypothetical RING finger protein ZK945.5 in chromosome II 1.0E-119
blast CAA88443 Hypothetical protein ZK945.5 [Caenorhabditis elegans] ref|NP_496180.1| ZK945.5 [Caenorhabditis elegans] sp|Q09623|YS85_CAEEL Hypothetical RING finger protein ZK945.5 in chromosome II 1.0E-118
blast A88284 protein ZK945.5 [imported] - Caenorhabditis elegans 1.0E-64
Sequence
Target Sequence 
>C. ELEGANS:188263_AT
gacagtcttcgataatcgcatgcccatttgatcgaattgagacgagaatttggaaaaaag
atgtgacgagactcaaaaagaattttagtattctggaaatcaaacaagaggtgaaagatc
gaaagaaccgagtaatttcggaaaagaatgagaaaaaggagaggaataagaatggagtct
gtgatgagaacacgaatcatcacgcttcgaattattgtgagacatgcgacgccgatttat
gtgaagaatgctggacgtggattcattctatatccacactagcacatcatgagaaaaaga
tgatttcaactcctgattgtcaatttcacccaggaaaaagtataagtcttgtgtgcatga
gagacagatgcaagaaacggcagaatcgactgatgtgcagcgaatgttttttggacaaat
gctcggatcatttcgagcacgagcatagctctctacacttggaactcccggagctcagaa
ggaacatctgttcgtcgttggcattgtatcatgaaaaagagaagaagatattggccaata
ttggaaaacttagagagtcagtgtataccttttttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGTCTTCGATAATCGCATGCCC 169 369 149 Antisense
CGCATGCCCATTTGATCGAATTGAG 242 255 165 Antisense
GAATCATCACGCTTCGAATTATTGT 314 327 342 Antisense
TATTGTGAGACATGCGACGCCGATT 469 663 361 Antisense
TGCTGGACGTGGATTCATTCTATAT 490 583 397 Antisense
ATATCCACACTAGCACATCATGAGA 410 21 418 Antisense
AACTCCTGATTGTCAATTTCACCCA 306 141 456 Antisense
GCATAGCTCTCTACACTTGGAACTC 349 307 591 Antisense
GAACTCCCGGAGCTCAGAAGGAACA 15 349 610 Antisense
AACATCTGTTCGTCGTTGGCATTGT 618 137 631 Antisense
GAGAGTCAGTGTATACCTTTTTTCA 563 395 701 Antisense
Sequence Source Affymetrix Proprietary Database