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[188261_at] Globin

Description C52A11.2 /REP_DB=WormBase Gene ID /WP=CE01528 /TR=Q09514 /GB=CAA86764.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Globin
Cluster 6grp_total > 35      4grp_total > 29      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 92.3
(-1.6)
A 		154.9
(3)
A 		72.6
(-3)
A 		124.6
(0.8)
A 		82
B 122.9
(2.7)
A 		71.4
(-1)
A 		42.4
(-3)
A 		127.3
(3)
M 		85
C 123.3
(3)
M 		62
(-2.2)
A 		52.7
(-3)
A 		98.7
(0.9)
A 		71
avr 112.8
(2.6) 		96.1
(1) 		55.9
(-3) 		116.9
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 93
(1.2)
P 		115.2
(3)
A 		95.4
(1.4)
P 		95.1
(1.4)
A 		39.7
(-3)
A 		83.8
(0.5)
A 		76
B 107
(1.3)
P 		132
(3)
M 		124.4
(2.5)
A 		44.2
(-3)
A 		86
(-0.1)
A 		88
(-0)
A 		88
C 154.9
(3)
P 		146.1
(2.5)
M 		84.7
(-0.8)
A 		74.2
(-1.4)
A 		43.7
(-3)
A 		61.8
(-2)
A 		111
avr 118.3
(2) 		131.1
(3) 		101.5
(0.6) 		71.2
(-1.8) 		56.5
(-3) 		77.9
(-1.3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 33.6
(3)
A 		33.6
(3)
A 		19
(-2.7)
A 		18.2
(-3)
A 		15
B 39.2
(3)
A 		17.6
(-1.4)
A 		9.8
(-3)
A 		27.1
(0.5)
M 		29
C 40.8
(3)
M 		17.8
(-2.7)
A 		18.4
(-2.6)
A 		16.6
(-3)
A 		24
avr 37.9
(3) 		23
(-1) 		15.7
(-3) 		20.6
(-1.7) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 17.1
(-1.9)
P 		41
(3)
A 		20.8
(-1.2)
P 		24.1
(-0.5)
A 		12
(-3)
A 		20.4
(-1.3)
A 		29
B 37.2
(1.8)
P 		43.9
(3)
M 		30.2
(0.4)
A 		11.7
(-3)
A 		34.9
(1.3)
A 		32.8
(0.9)
A 		32
C 57.4
(3)
P 		44.6
(1.2)
M 		21.6
(-2)
A 		14.9
(-2.9)
A 		14.1
(-3)
A 		20.7
(-2.1)
A 		43
avr 37.2
(1.6) 		43.2
(3) 		24.2
(-1.3) 		16.9
(-3) 		20.3
(-2.2) 		24.6
(-1.2) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188261_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3692
Sequence Type Exemplar sequence
Representative Public ID C52A11.2 NCBI
Target Description C52A11.2 /REP_DB=WormBase Gene ID /WP=CE01528 /TR=Q09514 /GB=CAA86764.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Globin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063913(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063913 NCBI Caenorhabditis elegans C52A11.2 (Globin) mRNA, complete cds. 11/11 None
SNAP00000035264 ENSEMBL cdna:SNAP chromosome:CEL140:II:10729080:10731473:-1 11/11 None
GENEFINDER00000035271 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10729816:10732897:-1 11/11 None
C52A11.2 ENSEMBL cdna:known chromosome:CEL140:II:10729816:10731473:-1 gene:C52A11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10729812-10731470(-) 100.0 100.0
Public Domain and Genome References
Gene Title Globin
Ensembl C52A11.2
Entrez Gene 174655 Entrez gene
SwissProt Q09514 EMBL-EBI
WormBase CE01528 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA86764 Hypothetical protein C52A11.2 [Caenorhabditis elegans] ref|NP_496314.1| C52A11.2 [Caenorhabditis elegans] 1.0E-150
blast CAE59614 Hypothetical protein CBG03023 [Caenorhabditis briggsae] 1.0E-142
blast CAA86764 Hypothetical protein C52A11.2 [Caenorhabditis elegans] ref|NP_496314.1| C52A11.2 [Caenorhabditis elegans] 1.0E-142
blast CAA86764 Hypothetical protein C52A11.2 [Caenorhabditis elegans] ref|NP_496314.1| C52A11.2 [Caenorhabditis elegans] 1.0E-134
blast CAE59614 Hypothetical protein CBG03023 [Caenorhabditis briggsae] 1.0E-134
blast CAE59614 Hypothetical protein CBG03023 [Caenorhabditis briggsae] 1.0E-128
Sequence
Target Sequence 
>C. ELEGANS:188261_AT
gaaccggacctcaagaaagtgtttggcgtggatcgggctccgcgagccgcgatgctgaaa
atgccgaaattcggagggcatattctaagattctatgagttcatggagcagctcacgtca
atgcttggcacgtctgaaaatctgacgggtgcatggcaattggtacgaaaaacgggaaga
agtcatgtcagacaaggtttcttggaacaaaatcagaaccagatggagaagaactatttc
gaaattgttataaatgtatttatcgagcgattaattccatttctgacgggtgaacaggag
cttccatcatcagaaggaaaagagaacaaaaaagtgcgatttgctcaaaactacaccaca
tctcaaatcacagacgtctggaagaagttcttaaacacagtaattagtcaaatgactgac
tcatttgaattggaaagagcaaaacagaagagtgcacaaacaacaaaagccttggctcca
catcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACCGGACCTCAAGAAAGTGTTTG 538 323 208 Antisense
AAAGTGTTTGGCGTGGATCGGGCTC 334 121 223 Antisense
TCCGCGAGCCGCGATGCTGAAAATG 515 595 246 Antisense
AGCAGCTCACGTCAATGCTTGGCAC 450 77 314 Antisense
AATGCTTGGCACGTCTGAAAATCTG 302 165 327 Antisense
GAAAATCTGACGGGTGCATGGCAAT 707 351 343 Antisense
GAGCGATTAATTCCATTTCTGACGG 705 385 472 Antisense
GGGTGAACAGGAGCTTCCATCATCA 253 497 495 Antisense
TTTGCTCAAAACTACACCACATCTC 190 669 547 Antisense
ACCACATCTCAAATCACAGACGTCT 549 85 562 Antisense
CAAAAGCCTTGGCTCCACATCAACA 185 191 671 Antisense
Sequence Source Affymetrix Proprietary Database