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[188259_at]

Description ZC250.1 /REP_DB=WormBase Gene ID /WP=CE28157 /GEN=cyp-17 /TR=O01880 /GB=AAB54233.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 40      6grp_cgc > 89      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 3.5
(-3)
A 		95.3
(3)
A 		80.1
(2)
A 		67.9
(1.2)
A 		92
B 1.8
(-3)
A 		140
(2.7)
A 		147.9
(3)
A 		8.9
(-2.7)
A 		146
C 6.7
(-3)
A 		34.7
(-1.6)
A 		130.9
(3)
A 		89.4
(1)
A 		124
avr 4
(-3) 		90
(1.5) 		119.6
(3) 		55.4
(-0.3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 14.4
(-3)
A 		41.1
(-2)
A 		159.1
(2.4)
A 		97.3
(0.1)
A 		175.7
(3)
A 		145.9
(1.9)
P 		161
B 57.3
(-3)
A 		115.7
(0.5)
A 		76
(-1.9)
A 		124.2
(1)
A 		157.6
(3)
A 		104
(-0.2)
M 		100
C 22.7
(-3)
A 		101.4
(3)
A 		40.6
(-1.6)
A 		42.8
(-1.5)
A 		101
(3)
A 		82.4
(1.6)
P 		79
avr 31.5
(-3) 		86.1
(-0.1) 		91.9
(0.2) 		88.1
(-0) 		144.8
(3) 		110.8
(1.2) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 1.3
(-3)
A 		20.7
(2.9)
A 		20.9
(3)
A 		9.9
(-0.4)
A 		20
B 0.6
(-3)
A 		34.6
(3)
A 		34.3
(2.9)
A 		1.9
(-2.8)
A 		34
C 2.2
(-3)
A 		10
(-1.9)
A 		45.6
(3)
A 		15.1
(-1.2)
A 		43
avr 1.4
(-3) 		21.8
(0.8) 		33.6
(3) 		9
(-1.6) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 2.6
(-3)
A 		14.6
(-1.6)
A 		34.6
(0.8)
A 		24.7
(-0.4)
A 		53
(3)
A 		35.5
(0.9)
P 		50
B 19.9
(-2.8)
A 		38.5
(-0.4)
A 		18.5
(-3)
A 		32.9
(-1.1)
A 		64
(3)
A 		38.8
(-0.3)
M 		46
C 8.4
(-3)
A 		30.9
(2.6)
A 		10.3
(-2.5)
A 		8.6
(-3)
A 		32.7
(3)
A 		27.6
(1.7)
P 		24
avr 10.3
(-3) 		28
(-0.3) 		21.1
(-1.4) 		22.1
(-1.2) 		49.9
(3) 		34
(0.6) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188259_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11624
Sequence Type Exemplar sequence
Representative Public ID ZC250.1 NCBI
Target Description ZC250.1 /REP_DB=WormBase Gene ID /WP=CE28157 /GEN=cyp-17 /TR=O01880 /GB=AAB54233.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072121(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072121 NCBI Caenorhabditis elegans CYclophyliN family member (cyn-17) (cyn-17) mRNA, complete cds. 11/11 None
ZC250.1 ENSEMBL cdna:known chromosome:CEL140:V:5802452:5810101:1 gene:ZC250.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024587 3/11 Cross Hyb Matching Probes None
SNAP00000024588 8/11 Cross Hyb Matching Probes None
GENEFINDER00000024590 3/11 Cross Hyb Matching Probes None
GENEFINDER00000024591 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5805444-5810101(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cyn-17
Ensembl ZC250.1
Entrez Gene 178969 Entrez gene
SwissProt O01880 EMBL-EBI
WormBase CE37686 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54233 Cyclophylin protein 17 [Caenorhabditis elegans] ref|NP_504522.2| CYclophyliN family member (cyn-17) [Caenorhabditis elegans] 0.0
blast CAE64565 Hypothetical protein CBG09316 [Caenorhabditis briggsae] 0.0
blast AAR27291 cyclophilin [Thellungiella halophila] 7.0E-9
Sequence
Target Sequence 
>C. ELEGANS:188259_AT
gccaattccaataacagtcccatctactggaccagaactttcacatcaaaaaccaaatga
agacatctctggaccagcattctggaataaatttcagccaaatcgttggtttgattcaat
tcattatgtgacaaataccggaaaagtgattattcaaatgaatgaagccctgaaaaagaa
cttgaccgaattgttcgtgaaaactgcgagaggcgaatttgttcatccatcttgtggaaa
gaaaatcgagtacactggaaccattcttcatcaaatatcaacttccaagaatatgatcat
gggtggggatgtacttaatggaaatggatgtggaagatgcgcacctgtctcccgtaaact
gttccaggaaaacaacttttcatcgactgttcagaacacgcgcggaaaagtgattcttct
accgtcggataccaacccaacagttttttcgtcccttttctatgtgcttctcgacaaatc
tggtccttccgttgtcgatggatgtcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAATTCCAATAACAGTCCCATCT 670 277 1065 Antisense
CTACTGGACCAGAACTTTCACATCA 479 225 1088 Antisense
GACATCTCTGGACCAGCATTCTGGA 4 371 1126 Antisense
GCGAATTTGTTCATCCATCTTGTGG 121 289 1277 Antisense
GAGTACACTGGAACCATTCTTCATC 672 399 1312 Antisense
GATGTGGAAGATGCGCACCTGTCTC 5 409 1391 Antisense
TGTCTCCCGTAAACTGTTCCAGGAA 511 553 1410 Antisense
ACAACTTTTCATCGACTGTTCAGAA 161 111 1436 Antisense
GTGATTCTTCTACCGTCGGATACCA 80 485 1474 Antisense
GTGCTTCTCGACAAATCTGGTCCTT 660 479 1528 Antisense
GTCCTTCCGTTGTCGATGGATGTCC 339 475 1547 Antisense
Sequence Source Affymetrix Proprietary Database