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[188258_s_at] lipase

Description T10B5.7 /REP_DB=WormBase Gene ID /WP=CE18237 /TR=O76409 /GB=AAC19230.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=lipase
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 71      4grp_highest_8_8 > 24      4grp_high_8_8 > 60      6grp_highest_nonorm > 55      6grp_total > 72      4grp_total > 60      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 545
1 2 3 4 range
A 1533.5
(-1.3)
P 		1820.9
(3)
P 		1646.8
(0.4)
P 		1422.9
(-3)
P 		398
B 1690.2
(3)
P 		1545
(0.6)
P 		1570.9
(1.1)
P 		1322.9
(-3)
P 		367
C 1498
(0.8)
P 		1452
(-0)
P 		1629.2
(3)
P 		1276
(-3)
P 		353
avr 1573.9
(2.1) 		1606
(2.8) 		1615.6
(3) 		1340.6
(-3) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1137
1 2 3 4 5 6 range
A 1241.4
(-3)
P 		1645.1
(-0.5)
P 		1950.1
(1.5)
P 		2195.4
(3)
P 		1721.9
(0)
P 		1442.4
(-1.7)
P 		954
B 1145.8
(-3)
P 		1649.3
(0.1)
P 		1654.3
(0.1)
P 		2068.1
(2.6)
P 		2132.4
(3)
P 		1209.6
(-2.6)
P 		987
C 1548.5
(-0.8)
P 		1538.9
(-0.9)
P 		2268.9
(3)
P 		2175.3
(2.5)
P 		2217
(2.7)
P 		1131.8
(-3)
P 		1137
avr 1311.9
(-2.7) 		1611.1
(-0.6) 		1957.8
(1.7) 		2146.3
(3) 		2023.8
(2.2) 		1261.3
(-3) 		885
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 558.4
(3)
P 		395.3
(0.2)
P 		430.5
(0.8)
P 		208.3
(-3)
P 		350
B 539
(3)
P 		381.6
(-0.7)
P 		364
(-1.1)
P 		281.9
(-3)
P 		257
C 495.9
(1.8)
P 		417.5
(0.4)
P 		567.8
(3)
P 		215.2
(-3)
P 		353
avr 531.1
(3) 		398.1
(0.3) 		454.1
(1.4) 		235.1
(-3) 		296

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 638
1 2 3 4 5 6 range
A 228.8
(-3)
P 		585.1
(3)
P 		424.7
(0.3)
P 		556.8
(2.5)
P 		519.6
(1.9)
P 		351.2
(-0.9)
P 		356
B 398.7
(-3)
P 		549
(-1.1)
P 		401.7
(-3)
P 		547.8
(-1.1)
P 		866.4
(3)
P 		451
(-2.3)
P 		468
C 574
(0.5)
P 		469.6
(-1.4)
P 		577.5
(0.5)
P 		437.5
(-2)
P 		717.4
(3)
P 		378.9
(-3)
P 		339
avr 400.5
(-2.9) 		534.6
(-0.2) 		468
(-1.5) 		514
(-0.7) 		701.1
(3) 		393.7
(-3) 		307
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188258_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14990
Sequence Type Exemplar sequence
Representative Public ID T10B5.7 NCBI
Target Description T10B5.7 /REP_DB=WormBase Gene ID /WP=CE18237 /TR=O76409 /GB=AAC19230.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=lipase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071116(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071116 NCBI Caenorhabditis elegans T10B5.7 (lipase) mRNA, complete cds. 11/11 None
SNAP00000014346 ENSEMBL cdna:SNAP chromosome:CEL140:V:1846061:1849102:1 11/11 None
GENEFINDER00000014363 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1846061:1847766:1 11/11 None
T10B5.7 ENSEMBL cdna:known chromosome:CEL140:V:1846047:1847805:1 gene:T10B5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1846060-1847766(+) 100.0 100.0
Public Domain and Genome References
Gene Title lipase
Ensembl T10B5.7
Entrez Gene 178665 Entrez gene
SwissProt O76409 EMBL-EBI
WormBase CE18237 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249999_AT lipase class 3 family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6629 lipid metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4806 triacylglycerol lipase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC19230 Hypothetical protein T10B5.7 [Caenorhabditis elegans] ref|NP_503517.1| T10B5.7 [Caenorhabditis elegans] 1.0E-180
blast AAC19230 Hypothetical protein T10B5.7 [Caenorhabditis elegans] ref|NP_503517.1| T10B5.7 [Caenorhabditis elegans] 1.0E-169
blast CAE66454 Hypothetical protein CBG11730 [Caenorhabditis briggsae] 1.0E-137
blast CAE66454 Hypothetical protein CBG11730 [Caenorhabditis briggsae] 1.0E-127
blast T33811 hypothetical protein F58B6.1 - Caenorhabditis elegans 2.0E-71
blast T33811 hypothetical protein F58B6.1 - Caenorhabditis elegans 4.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 3.1E-60
Sequence
Target Sequence 
>C. ELEGANS:188258_S_AT
ttatcattgcgttcagaggcaccaaaggagtattgcaattgcttgtggaatccgatgaga
taatgtacagaaataagaccgcgtggtttggtggcggaaacgtcggtttctactttgcga
gaagttacaatttactatggaatgctggaatgaaggaagacttcaatacgctgaagcatg
catatcccggctatgagatttgggtcggaggccactcccttggaggatccatggcagctc
tagcatccaactacctcgtcgctaacggacttgccacgtcgtccaacctcaaaatgatca
cgttcggagagccacgtaccggcgacaaggcttttgcagacgcccacgacaaaatggtaa
cctactcgtacagaattgtccatcacaaggacattgtcccacatattccattaaacggaa
tggccgagttccatcatcatcggaatgaggtttggtatgacaatgacatgctgaaggccg
tattcaaggagtgcgatgctcaggaatccccgttctgttcggatagtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCATTGCGTTCAGAGGCACCAA 87 681 293 Antisense
TACGCTGAAGCATGCATATCCCGGC 375 649 459 Antisense
TGAGATTTGGGTCGGAGGCCACTCC 226 555 486 Antisense
AGGATCCATGGCAGCTCTAGCATCC 689 55 516 Antisense
GTACCGGCGACAAGGCTTTTGCAGA 231 459 608 Antisense
TTGCAGACGCCCACGACAAAATGGT 94 703 626 Antisense
ACCTACTCGTACAGAATTGTCCATC 49 87 652 Antisense
AGGACATTGTCCCACATATTCCATT 650 55 680 Antisense
GGCCGAGTTCCATCATCATCGGAAT 503 539 714 Antisense
AGGAGTGCGATGCTCAGGAATCCCC 155 57 779 Antisense
AATCCCCGTTCTGTTCGGATAGTCA 62 145 797 Antisense
Sequence Source Affymetrix Proprietary Database