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[188256_at]

Description Y73B6A.4 /REP_DB=WormBase Gene ID /WP=CE25584 /GEN=smg-7 /TR=Q9Y053 /GB=AAF36043.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 57      6grp_high1_10_10 > 75      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 81      6grp_total > 75      4grp_total > 22      6grp_cgc > 57      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 222
1 2 3 4 range
A 292.4
(2.8)
P 		211.2
(0.1)
P 		118.9
(-3)
P 		297
(3)
P 		178
B 335.7
(3)
P 		220.4
(-1.2)
P 		171.2
(-3)
P 		305.4
(1.9)
P 		165
C 290
(1.4)
P 		156
(-3)
P 		185.6
(-2)
P 		340.7
(3)
P 		185
avr 306
(2.7) 		195.9
(-1.6) 		158.6
(-3) 		314.4
(3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 308.2
(-0.4)
P 		269.3
(-3)
P 		357.8
(3)
P 		324.9
(0.8)
P 		288.4
(-1.7)
P 		340.4
(1.8)
P 		89
B 273.6
(-3)
P 		280.2
(-2.4)
P 		316.8
(0.6)
P 		299.6
(-0.8)
P 		296.3
(-1.1)
P 		345
(3)
P 		71
C 238.5
(-3)
P 		358.1
(2.2)
P 		283.5
(-1.1)
P 		353
(1.9)
P 		315.6
(0.3)
P 		377.3
(3)
P 		139
avr 273.4
(-3) 		302.5
(-0.8) 		319.4
(0.4) 		325.8
(0.9) 		300.1
(-1) 		354.2
(3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 106.5
(3)
P 		45.8
(-1.8)
P 		31.1
(-3)
P 		43.5
(-2)
P 		75
B 107
(3)
P 		54.4
(-1.7)
P 		39.7
(-3)
P 		65.1
(-0.7)
P 		67
C 96
(3)
P 		44.9
(-3)
P 		64.7
(-0.7)
P 		57.4
(-1.5)
P 		51
avr 103.2
(3) 		48.4
(-2.7) 		45.2
(-3) 		55.3
(-2) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 56.8
(-3)
P 		95.8
(3)
P 		77.9
(0.2)
P 		82.4
(0.9)
P 		87
(1.6)
P 		82.9
(1)
P 		39
B 95.2
(-0.9)
P 		93.3
(-1.1)
P 		76.9
(-3)
P 		79.4
(-2.7)
P 		120.4
(2)
P 		128.6
(3)
P 		52
C 88.4
(-1.1)
P 		109.3
(1.2)
P 		72.2
(-2.9)
P 		71
(-3)
P 		102.1
(0.4)
P 		126.3
(3)
P 		55
avr 80.1
(-2.3) 		99.5
(0.9) 		75.7
(-3) 		77.6
(-2.7) 		103.2
(1.5) 		112.6
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188256_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9279
Sequence Type Exemplar sequence
Representative Public ID Y73B6A.4 NCBI
Target Description Y73B6A.4 /REP_DB=WormBase Gene ID /WP=CE25584 /GEN=smg-7 /TR=Q9Y053 /GB=AAF36043.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068632(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068632 NCBI Caenorhabditis elegans Suppressor with Morphological effect on Genitalia family member (smg-7) (smg-7) mRNA, complete cds. 11/11 None
SNAP00000010733 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6740590:6742414:-1 10/11 None
GENEFINDER00000010737 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6740590:6742414:-1 11/11 None
Y73B6A.4 ENSEMBL cdna:known chromosome:CEL140:IV:6740481:6742427:-1 gene:Y73B6A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6740595-6742420(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol smg-7
Ensembl Y73B6A.4
Entrez Gene 177435 Entrez gene
SwissProt Q9Y053 EMBL-EBI
WormBase CE25584 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36043 Suppressor with morphological effect on genitalia protein 7 [Caenorhabditis elegans] ref|NP_501033.1| Suppressor with Morphological effect on Genitalia family member (smg-7) [Caenorhabditis elegans] gb|AAD04156.1| SMG-7 [Caenorhabditis elegans] 0.0
blast CAE61488 Hypothetical protein CBG05383 [Caenorhabditis briggsae] 1.0E-135
blast CAE61488 Hypothetical protein CBG05383 [Caenorhabditis briggsae] 2.0E-91
blast XP_794411 PREDICTED: similar to Est1p-like protein A, partial [Strongylocentrotus purpuratus] 4.0E-9
Sequence
Target Sequence 
>C. ELEGANS:188256_AT
atgattgttcctctaatgtctgtatataaacatctcgaggacggaactgaacttgaacaa
cgagccgtagagtatgtcaaaactatttggtgtacggcctaccgaagtctcctgaaaact
ttggatgattataaggaggaatcaaaaaaactggcagatgttccacatcttcttcatatt
ctggcacttttactctgtgcacctaaactccttcgcggtattgaagaccaaactgaagat
gaagtaacatcaatttgcgaatggcttctatgcgcaaattgtgatgagaaaatcaaggat
tctgatgcttttggatattttcattgtcttcaaagaattcaatatccactcactagaact
caattggctcagaaattagttgaaatagaggatgaagatgaatctaaagattccgatcaa
tcaacaataccagaagaagatcagaaaagcctttctacagacacttcaagaattcaaaac
gaggattcggaacctgaatctgaatctgaatcttcggatgaggaagttttgcaacgtggc
cgtcggcgtggaagaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATTGTTCCTCTAATGTCTGTAT 477 47 787 Antisense
TTTGGTGTACGGCCTACCGAAGTCT 4 663 872 Antisense
TGGCAGATGTTCCACATCTTCTTCA 141 547 938 Antisense
ATCTTCTTCATATTCTGGCACTTTT 508 31 953 Antisense
CTGGCACTTTTACTCTGTGCACCTA 429 241 967 Antisense
CACCTAAACTCCTTCGCGGTATTGA 22 187 986 Antisense
GCGAATGGCTTCTATGCGCAAATTG 273 289 1043 Antisense
CAATATCCACTCACTAGAACTCAAT 377 181 1126 Antisense
GAAAAGCCTTTCTACAGACACTTCA 401 353 1230 Antisense
GAGGAAGTTTTGCAACGTGGCCGTC 542 403 1306 Antisense
CGTGGCCGTCGGCGTGGAAGAAATC 425 243 1321 Antisense
Sequence Source Affymetrix Proprietary Database