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[188255_at]

Description F33H1.5 /REP_DB=WormBase Gene ID /WP=CE02207 /GEN=srd-1 /TR=SW:Q19992 /GB=CAA88700.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 63      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 54.8
(2.1)
A 		29.4
(-3)
A 		59.4
(3)
A 		46.3
(0.4)
A 		30
B 65.3
(2.1)
A 		29.4
(-2.4)
A 		72.8
(3)
A 		24.7
(-3)
A 		48
C 70.7
(3)
A 		22.6
(-3)
A 		31.5
(-1.9)
A 		65.3
(2.3)
A 		48
avr 63.6
(3) 		27.1
(-3) 		54.6
(1.5) 		45.4
(0) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 60.3
(2.4)
A 		64.6
(3)
A 		41.3
(-0)
A 		33.4
(-1)
A 		18.2
(-3)
A 		30.9
(-1.4)
A 		46
B 68.8
(3)
A 		35.6
(-0.5)
A 		57.3
(1.8)
A 		20.1
(-2.1)
A 		37
(-0.3)
A 		11.1
(-3)
A 		58
C 9.6
(-2.1)
A 		47.9
(3)
A 		35.4
(1.3)
A 		3.1
(-3)
A 		36.7
(1.5)
A 		42.3
(2.3)
A 		45
avr 46.2
(2.4) 		49.4
(3) 		44.7
(2.1) 		18.9
(-3) 		30.6
(-0.7) 		28.1
(-1.2) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 19.9
(3)
A 		6.4
(-3)
A 		15.5
(1)
A 		6.8
(-2.8)
A 		14
B 20.8
(3)
A 		7.3
(-2.2)
A 		16.9
(1.5)
A 		5.3
(-3)
A 		16
C 23.4
(3)
A 		6.5
(-3)
A 		11
(-1.4)
A 		11
(-1.4)
A 		17
avr 21.4
(3) 		6.7
(-3) 		14.5
(0.2) 		7.7
(-2.6) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 11.1
(-1.1)
A 		23
(3)
A 		9
(-1.8)
A 		8.5
(-2)
A 		5.5
(-3)
A 		7.5
(-2.3)
A 		18
B 23.9
(3)
A 		11.8
(-0.7)
A 		13.9
(-0)
A 		5.3
(-2.6)
A 		15
(0.3)
A 		4.1
(-3)
A 		20
C 3.6
(-1.7)
A 		14.6
(3)
A 		9
(0.6)
A 		0.6
(-3)
A 		11.9
(1.8)
A 		14.1
(2.8)
A 		14
avr 12.9
(1.2) 		16.5
(3) 		10.6
(-0) 		4.8
(-3) 		10.8
(0.1) 		8.6
(-1.1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188255_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3588
Sequence Type Exemplar sequence
Representative Public ID F33H1.5 NCBI
Target Description F33H1.5 /REP_DB=WormBase Gene ID /WP=CE02207 /GEN=srd-1 /TR=SW:Q19992 /GB=CAA88700.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063794(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063794 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-1) (srd-1) mRNA, complete cds. 11/11 None
SNAP00000027291 ENSEMBL cdna:SNAP chromosome:CEL140:II:10180110:10182645:-1 11/11 None
GENEFINDER00000027292 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10180110:10182645:-1 11/11 None
F33H1.5 ENSEMBL cdna:known chromosome:CEL140:II:10180110:10182645:-1 gene:F33H1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10180106-10182642(-) 95.61 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-1
Ensembl F33H1.5
Entrez Gene 191794 Entrez gene
SwissProt Q19992 EMBL-EBI
WormBase CE02207 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88700 Hypothetical protein F33H1.5 [Caenorhabditis elegans] ref|NP_496195.1| Serpentine Receptor, class D (delta) family member (srd-1) [Caenorhabditis elegans] sp|Q19992|SRD1_CAEEL Serpentine receptor class delta-1 (Protein srd-1) 0.0
blast 2123261AP chemosensory receptor 0.0
blast CAE57819 Hypothetical protein CBG00843 [Caenorhabditis briggsae] 1.0E-158
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496195.1 6 34-51,63-82,107-129,149-171,207-229,258-280
F33H1.5 6 34-51,63-82,107-129,149-171,207-229,258-280
SNAP00000027291 6 34-51,63-82,107-129,149-171,207-229,258-280
GENEFINDER00000027292 6 34-51,63-82,107-129,149-171,207-229,258-280
Sequence
Target Sequence 
>C. ELEGANS:188255_AT
cgaccttcatccacagtatcattatgacgatagagagatttggggagatatagtggtgag
tggaaacaccacagttcttacgattccatcattgatcgcaattttctacatgacaatgcc
atgtgttccaatctattttatcattcactacttccgagataagactctgagcacacttgc
cagcaatgcattgagcatgtctccagcaaccaaggcttctcatcaaaaacttattatggc
cttgtcaatccaagctgcgattccaattttctggctcgttgcgtctggaatctttacact
tgccgaatttggcatcatcgatggaccaatccctgagaacataacattccgtttgatgga
ttgcattccgtcatcgagcccactggttgcatttatcttcatcgctccgtacagaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACCTTCATCCACAGTATCATTAT 705 249 555 Antisense
AACACCACAGTTCTTACGATTCCAT 589 135 619 Antisense
TAAGACTCTGAGCACACTTGCCAGC 710 637 714 Antisense
TGCATTGAGCATGTCTCCAGCAACC 550 577 741 Antisense
TCCAGCAACCAAGGCTTCTCATCAA 291 589 756 Antisense
ATGGCCTTGTCAATCCAAGCTGCGA 688 51 790 Antisense
GCGATTCCAATTTTCTGGCTCGTTG 43 291 811 Antisense
GTCTGGAATCTTTACACTTGCCGAA 25 471 837 Antisense
GCATCATCGATGGACCAATCCCTGA 37 309 866 Antisense
TCATCGAGCCCACTGGTTGCATTTA 489 621 925 Antisense
TTATCTTCATCGCTCCGTACAGAGA 700 679 947 Antisense
Sequence Source Affymetrix Proprietary Database