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[188254_s_at] esterase

Description K04G2.5 /REP_DB=WormBase Gene ID /WP=CE27390 /TR=Q21224 /GB=CAB00042.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=esterase
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 60      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 65      6grp_total > 61      4grp_total > 56      6grp_highest_sub > 03_04      6grp_cgc > 94      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 412
1 2 3 4 range
A 961.1
(-3)
P 		1182.5
(0.2)
P 		1372.8
(3)
P 		1079.5
(-1.3)
P 		412
B 1044.7
(-1.9)
P 		1048.7
(-1.9)
P 		1306.8
(3)
P 		988
(-3)
P 		319
C 1050
(-2.4)
P 		1160.9
(0.5)
P 		1253.5
(3)
P 		1028.7
(-3)
P 		225
avr 1018.6
(-3) 		1130.7
(-0.7) 		1311
(3) 		1032.1
(-2.7) 		292

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 537
1 2 3 4 5 6 range
A 1131.5
(-1.4)
P 		1159
(-1)
P 		1454.8
(2.8)
P 		1471.3
(3)
P 		1061.7
(-2.3)
P 		1007.4
(-3)
P 		464
B 1099.5
(0.1)
P 		1097.9
(0.1)
P 		1233.2
(2.8)
P 		1134.9
(0.8)
P 		1241.9
(3)
P 		945.7
(-3)
P 		296
C 1329.7
(1.2)
P 		986
(-2.8)
P 		1219.1
(-0.1)
P 		1482.4
(3)
P 		1122.3
(-1.2)
P 		970.1
(-3)
P 		512
avr 1186.9
(0.3) 		1081
(-1.4) 		1302.4
(2.1) 		1362.9
(3) 		1142
(-0.4) 		974.4
(-3) 		389
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 349.9
(2.7)
P 		256.7
(-0.1)
P 		358.9
(3)
P 		158
(-3)
P 		201
B 333.1
(3)
P 		259
(-0.6)
P 		302.8
(1.5)
P 		210.6
(-3)
P 		123
C 347.6
(1)
P 		333.8
(0.7)
P 		436.9
(3)
P 		173.5
(-3)
P 		263
avr 343.5
(2.3) 		283.2
(0.3) 		366.2
(3) 		180.7
(-3) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 296
1 2 3 4 5 6 range
A 208.6
(-3)
P 		412.2
(3)
P 		316.8
(0.2)
P 		373.2
(1.9)
P 		320.4
(0.3)
P 		245.3
(-1.9)
P 		204
B 382.6
(-0.6)
P 		365.5
(-1.1)
P 		299.5
(-3)
P 		300.6
(-3)
P 		504.6
(3)
P 		352.6
(-1.4)
P 		205
C 492.9
(3)
P 		300.8
(-2.9)
P 		310.3
(-2.6)
P 		298.1
(-3)
P 		363.2
(-1)
P 		324.8
(-2.2)
P 		195
avr 361.4
(0.6) 		359.5
(0.5) 		308.9
(-2.9) 		324
(-1.9) 		396.1
(3) 		307.6
(-3) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188254_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1402
Sequence Type Exemplar sequence
Representative Public ID K04G2.5 NCBI
Target Description K04G2.5 /REP_DB=WormBase Gene ID /WP=CE27390 /TR=Q21224 /GB=CAB00042.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=esterase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059812(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059812 NCBI Caenorhabditis elegans K04G2.5 (esterase) mRNA, complete cds. 11/11 None
SNAP00000009073 ENSEMBL cdna:SNAP chromosome:CEL140:I:8045310:8051693:-1 11/11 None
GENEFINDER00000009096 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8045310:8048646:-1 11/11 None
K04G2.5.1 ENSEMBL cdna:known chromosome:CEL140:I:8045087:8047036:-1 gene:K04G2.5 11/11 None
K04G2.5.2 ENSEMBL cdna:known chromosome:CEL140:I:8045087:8047038:-1 gene:K04G2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8045240-8048322(-) 100.0 100.0
Public Domain and Genome References
Gene Title esterase
Gene Symbol ath-1
Ensembl K04G2.5
Entrez Gene 172587 Entrez gene
SwissProt Q21224 EMBL-EBI
WormBase CE27390 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:254351_AT phospholipase/carboxylesterase family protein at
CANINE_2:CFA.18722.1.S1_S_AT similar to Acyl-protein thioesterase 1 (Lysophospholipase I) cfa
CANINE_2:CFAAFFX.11343.1.S1_AT similar to Acyl-protein thioesterase 1 (Lysophospholipase I) cfa
DROSOPHILA_2:1629759_AT dm
DROSGENOME1:151973_AT dm
CHICKEN:GGA.14685.1.S1_AT similar to Acyl-protein thioesterase 1 (Lysophospholipase I) gga
CHICKEN:GGA.5337.1.S1_AT similar to Acyl-protein thioesterase 1 (Lysophospholipase I) gga
HG-U133_PLUS_2:203007_X_AT lysophospholipase I hs
HG-U133A_2:203007_X_AT lysophospholipase I hs
HG-U133A:203007_X_AT lysophospholipase I hs
HU35KSUBA:RC_AA251902_AT lysophospholipase I hs
HU35KSUBA:AA252436_AT lysophospholipase I hs
HU35KSUBD:RC_AA232315_AT lysophospholipase I hs
U133_X3P:G4679009_3P_A_AT lysophospholipase I hs
U133_X3P:HS.12540.2.A1_3P_A_AT lysophospholipase I hs
HG-U133A_2:212449_S_AT lysophospholipase I hs
HG-FOCUS:212449_S_AT lysophospholipase I hs
HG-U133_PLUS_2:212449_S_AT lysophospholipase I hs
HG-U133A:212449_S_AT lysophospholipase I hs
HG-U95AV2:39396_AT lysophospholipase I hs
MG-U74AV2:101946_AT lysophospholipase 1 mm
MU11KSUBA:AA243951_S_AT lysophospholipase 1 mm
MG-U74AV2:101944_AT lysophospholipase 1 mm
MG-U74AV2:97207_F_AT lysophospholipase 1 mm
MG-U74AV2:101945_G_AT lysophospholipase 1 mm
MG-U74AV2:161774_F_AT lysophospholipase 1 mm
MOE430A:1448244_AT lysophospholipase 1 mm
MOUSE430A_2:1448244_AT lysophospholipase 1 mm
MOUSE430_2:1448244_AT lysophospholipase 1 mm
MOE430B:1453949_S_AT lysophospholipase 1 mm
MOUSE430_2:1453949_S_AT lysophospholipase 1 mm
MOE430B:1431607_AT lysophospholipase 1 mm
MOUSE430_2:1431607_AT lysophospholipase 1 mm
MG-U74CV2:170996_F_AT Lysophospholipase 1, mRNA (cDNA clone MGC:19218 IMAGE:4240573) mm
MU19KSUBB:TC26406_R_AT Lysophospholipase 1, mRNA (cDNA clone MGC:19218 IMAGE:4240573) mm
MU19KSUBB:TC33824_AT Lysophospholipase 1, mRNA (cDNA clone MGC:19218 IMAGE:4240573) mm
RAE230A:1367832_AT lysophospholipase 1 rn
RAT230_2:1367832_AT lysophospholipase 1 rn
RG-U34A:RC_AA891633_F_AT lysophospholipase 1 rn
RG-U34A:RC_AA800220_AT lysophospholipase 1 rn
RG-U34A:U97146_AT lysophospholipase 1 rn
Protein Similarities
Method ID Description E-Value
blast CAB00042 Hypothetical protein K04G2.5 [Caenorhabditis elegans] ref|NP_492213.1| K04G2.5 [Caenorhabditis elegans] 1.0E-129
blast CAB00042 Hypothetical protein K04G2.5 [Caenorhabditis elegans] ref|NP_492213.1| K04G2.5 [Caenorhabditis elegans] 1.0E-128
blast AAU01163 acyl protein thioesterase 1 [Caenorhabditis elegans] gb|AAU01162.1| acyl protein thioesterase 1 [Caenorhabditis elegans] 1.0E-122
blast AAU01163 acyl protein thioesterase 1 [Caenorhabditis elegans] gb|AAU01162.1| acyl protein thioesterase 1 [Caenorhabditis elegans] 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR004038 EMBL-EBI Ribosomal protein L7Ae/L30e/S12e/Gadd45 5.3E-5
Pfam IPR003140 EMBL-EBI Phospholipase/Carboxylesterase 4.9E-120
Pfam IPR004038 EMBL-EBI Ribosomal protein L7Ae/L30e/S12e/Gadd45 4.5E-7
Pfam IPR003140 EMBL-EBI Phospholipase/Carboxylesterase 4.9E-120
Pfam IPR003140 EMBL-EBI Phospholipase/Carboxylesterase 4.9E-120
Sequence
Target Sequence 
>C. ELEGANS:188254_S_AT
ttaatcttccttcatggactcggtgatcaagggcatggttgggcagatgctttcaagaca
gaagccaaacacgataatatcaagtttatctgtccacacagctctgaacgtccagtaacc
ctcaatatgggaatgcgaatgccagcttggttcgacttatttggcctcgatccaaatgct
caggaagatgagcaaggaattaatcgagctacccaatatgttcatcaattgattgatgcg
gaagttgcagctggaattccagcttctcgaattgctgtcggtggattttcaatgggtgga
gctctcgctatttacgctggtctcacatatccacagaaacttggaggaattgttggactc
agttcattctttttgcagagaaccaaattcccagggagcttcactgcgaacaatgctaca
ccaatcttcctcggacatggaacagacgactttttggttcctcttcaattcggacaaatg
tccgagcagtatattaaaaaattcaatccgaaagttgagcttcacacctacagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAATCTTCCTTCATGGACTCGGTG 370 683 406 Antisense
TCCACACAGCTCTGAACGTCCAGTA 605 587 498 Antisense
GGGAATGCGAATGCCAGCTTGGTTC 516 493 534 Antisense
AGCTTGGTTCGACTTATTTGGCCTC 568 77 549 Antisense
TGGCCTCGATCCAAATGCTCAGGAA 220 545 567 Antisense
ATCGAGCTACCCAATATGTTCATCA 133 37 608 Antisense
AATGGGTGGAGCTCTCGCTATTTAC 474 163 696 Antisense
GTTGGACTCAGTTCATTCTTTTTGC 44 437 757 Antisense
GAACAATGCTACACCAATCTTCCTC 698 351 813 Antisense
TTTGGTTCCTCTTCAATTCGGACAA 653 665 858 Antisense
GAAAGTTGAGCTTCACACCTACAGG 10 361 915 Antisense
Sequence Source Affymetrix Proprietary Database