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[188247_s_at] ATPase

Description C10G11.8 /REP_DB=WormBase Gene ID /WP=CE27676 /TR=P91025 /GB=AAB42248.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ATPase
Cluster 6grp_total > 98      4grp_total > 13      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 35
(-1.9)
A 		20.9
(-3)
A 		32.4
(-2.1)
A 		96.5
(3)
A 		76
B 36.6
(3)
A 		12.2
(-1.7)
A 		5.7
(-3)
A 		8.9
(-2.4)
A 		31
C 52
(1.8)
A 		29.2
(-1.1)
A 		14.2
(-3)
A 		61.9
(3)
A 		48
avr 41.2
(0.7) 		20.8
(-2.5) 		17.4
(-3) 		55.8
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 452
1 2 3 4 5 6 range
A 7.3
(-3)
A 		5.7
(-3)
A 		10.7
(-2.9)
A 		38.1
(-2.6)
A 		255.3
(0.3)
P 		455.8
(3)
P 		450
B 9.4
(-2.9)
A 		5.7
(-3)
A 		4.2
(-3)
A 		66
(-2)
A 		245.9
(1.1)
P 		360.8
(3)
P 		357
C 6.1
(-3)
A 		12.3
(-2.9)
A 		13.9
(-2.9)
A 		50.9
(-2.4)
A 		304.2
(1.2)
P 		427.6
(3)
P 		422
avr 7.6
(-3) 		7.9
(-3) 		9.6
(-3) 		51.7
(-2.4) 		268.5
(0.8) 		414.7
(3) 		407
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 12.7
(2.1)
A 		4.5
(-3)
A 		8.5
(-0.5)
A 		14.1
(3)
A 		10
B 11.7
(3)
A 		3
(-2)
A 		1.3
(-3)
A 		1.9
(-2.7)
A 		10
C 17.2
(3)
A 		8.4
(-1.3)
A 		4.9
(-3)
A 		10.4
(-0.3)
A 		12
avr 13.9
(3) 		5.3
(-2.7) 		4.9
(-3) 		8.8
(-0.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 142
1 2 3 4 5 6 range
A 1.3
(-3)
A 		2
(-3)
A 		2.3
(-2.9)
A 		9.7
(-2.5)
A 		77
(1.1)
P 		111
(3)
P 		110
B 3.3
(-2.9)
A 		1.9
(-3)
A 		1
(-3)
A 		17.5
(-2.3)
A 		99.9
(1.4)
P 		134.5
(3)
P 		134
C 2.3
(-3)
A 		3.7
(-2.9)
A 		3.5
(-2.9)
A 		10.2
(-2.7)
A 		98.5
(1.1)
P 		143.1
(3)
P 		141
avr 2.3
(-3) 		2.5
(-3) 		2.3
(-3) 		12.5
(-2.5) 		91.8
(1.2) 		129.5
(3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188247_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1844
Sequence Type Exemplar sequence
Representative Public ID C10G11.8 NCBI
Target Description C10G11.8 /REP_DB=WormBase Gene ID /WP=CE27676 /TR=P91025 /GB=AAB42248.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ATPase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059410(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059410 NCBI Caenorhabditis elegans C10G11.8 (ATPase) mRNA, complete cds. 11/11 None
SNAP00000041159 ENSEMBL cdna:SNAP chromosome:CEL140:I:6280148:6281786:-1 11/11 None
GENEFINDER00000041167 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6280148:6283374:-1 11/11 None
C10G11.8 ENSEMBL cdna:known chromosome:CEL140:I:6280137:6281903:-1 gene:C10G11.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6280076-6281923(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATPase
Ensembl C10G11.8
Entrez Gene 172324 Entrez gene
SwissProt P91025 EMBL-EBI
WormBase CE27676 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30163 protein catabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
166 nucleotide binding inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42248 Hypothetical protein C10G11.8 [Caenorhabditis elegans] ref|NP_491811.1| C10G11.8 [Caenorhabditis elegans] 0.0
blast CAE65902 Hypothetical protein CBG11069 [Caenorhabditis briggsae] 0.0
blast A44468 26S proteasome regulatory chain 4 [validated] - human 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.7E-83
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.7E-83
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000041167 1 173-192
Sequence
Target Sequence 
>C. ELEGANS:188247_S_AT
aacatctgcaacattcatccgtgcaactggatccgatcttgttcagaaacaaagtgggga
aggtgctcgtcttgttcgtcaaatcttccaaatggcaaaggaacaggctccatcgattgt
attcattgatgaaattgatgcagttggtacgaaaagatttgatacttcttcacgtggaga
acaagaagttcaacgaactcttcttgagctcttaaatcaattggacgggtttgaaagccg
tggagatgtcaaaattatcatggcaacgaacagaatcgactcgctggatcccgctcttat
ccgtcctggacgaattgatagaaagattgagttaccaaaaccagatgagaagactagaca
aaagattttcacgatccacacctctggaatgacgattcagaaagctgtcacctatgagaa
tgtattgggaaaggagaagagcattagtggagctgaaatcaaggcggtttgcacggaagc
tggtatgctggctcttcgtgctcaacgaaaatgtgtcggaacggatgactttgagaaggc
tgtcaaatcggttatgctgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATCTGCAACATTCATCCGTGCA 55 139 897 Antisense
CATCCGTGCAACTGGATCCGATCTT 402 211 912 Antisense
AAAGTGGGGAAGGTGCTCGTCTTGT 615 119 947 Antisense
GGAACAGGCTCCATCGATTGTATTC 250 529 996 Antisense
TCAACGAACTCTTCTTGAGCTCTTA 522 631 1086 Antisense
GAACAGAATCGACTCGCTGGATCCC 540 351 1164 Antisense
CGCTCTTATCCGTCCTGGACGAATT 639 253 1188 Antisense
TTCACGATCCACACCTCTGGAATGA 419 687 1264 Antisense
CAAGGCGGTTTGCACGGAAGCTGGT 237 167 1356 Antisense
CGGAAGCTGGTATGCTGGCTCTTCG 707 241 1370 Antisense
AGGCTGTCAAATCGGTTATGCTGTC 158 53 1433 Antisense
Sequence Source Affymetrix Proprietary Database