[Home] | [Total List]

[188246_at]

Description W03F11.2 /REP_DB=WormBase Gene ID /WP=CE14544 /GEN=gcy-24 /TR=O01779 /GB=AAK18985.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 07      6grp_cgc > 70      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 52
(-1.1)
P 		29.9
(-3)
A 		46.8
(-1.5)
A 		99.5
(3)
A 		70
B 76.3
(3)
P 		41.8
(-3)
M 		52.3
(-1.2)
A 		72.6
(2.4)
M 		35
C 78.8
(2.4)
P 		28.7
(-3)
A 		49.2
(-0.8)
A 		84.6
(3)
P 		56
avr 69
(1.1) 		33.5
(-3) 		49.4
(-1.2) 		85.6
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 42.9
(1.6)
A 		44.2
(1.8)
A 		45.8
(2.1)
A 		18.4
(-3)
A 		50.5
(3)
A 		28
(-1.2)
A 		32
B 31.2
(0.2)
A 		50.4
(2.8)
A 		51.8
(3)
A 		8.4
(-3)
A 		37.8
(1.1)
A 		27.9
(-0.3)
A 		43
C 68.8
(0.3)
A 		44.1
(-2.2)
A 		53.7
(-1.3)
A 		96.3
(3)
A 		36.2
(-3)
A 		45.1
(-2.1)
A 		60
avr 47.6
(2) 		46.2
(1.5) 		50.4
(3) 		41
(-0.4) 		41.5
(-0.2) 		33.7
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 18.9
(3)
P 		6.5
(-3)
A 		12.2
(-0.2)
A 		14.6
(0.9)
A 		12
B 24.3
(3)
P 		10.3
(-3)
M 		12.1
(-2.2)
A 		15.5
(-0.8)
M 		14
C 26.1
(3)
P 		8.3
(-3)
A 		17.2
(-0)
A 		14.3
(-1)
P 		18
avr 23.1
(3) 		8.4
(-3) 		13.8
(-0.8) 		14.8
(-0.4) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 7.9
(-1.3)
A 		15.7
(3)
A 		10
(-0.1)
A 		4.7
(-3)
A 		15.2
(2.7)
A 		6.8
(-1.9)
A 		11
B 10.9
(0.6)
A 		16.8
(3)
A 		12.6
(1.3)
A 		2.2
(-3)
A 		15.4
(2.4)
A 		10.4
(0.4)
A 		15
C 25.5
(3)
A 		13.5
(-2.2)
A 		13.7
(-2.1)
A 		19.4
(0.3)
A 		11.7
(-3)
A 		15.1
(-1.5)
A 		14
avr 14.8
(2.5) 		15.3
(3) 		12.1
(0) 		8.8
(-3) 		14.1
(1.9) 		10.8
(-1.2) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188246_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.310
Sequence Type Exemplar sequence
Representative Public ID W03F11.2 NCBI
Target Description W03F11.2 /REP_DB=WormBase Gene ID /WP=CE14544 /GEN=gcy-24 /TR=O01779 /GB=AAK18985.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058542(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058542 NCBI Caenorhabditis elegans Guanylyl CYclase family member (gcy-17) (gcy-17) mRNA, complete cds. 10/11 None
SNAP00000024823 ENSEMBL cdna:SNAP chromosome:CEL140:I:2215542:2234847:-1 10/11 None
GENEFINDER00000024825 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2223354:2234847:-1 11/11 None
W03F11.2 ENSEMBL cdna:known chromosome:CEL140:I:2223308:2233192:-1 gene:W03F11.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2223353-2233192(-) 84.91 95.78
Public Domain and Genome References
Gene Title
Gene Symbol gcy-17
Ensembl W03F11.2
Entrez Gene 191649 Entrez gene
SwissProt O01779 EMBL-EBI
WormBase CE32226 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4383 guanylate cyclase activity inferred from electronic annotation QuickGO AmiGO
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18985 Guanylyl cyclase protein 17 [Caenorhabditis elegans] ref|NP_490943.3| Guanylyl CYclase family member (gcy-17) [Caenorhabditis elegans] 0.0
blast T29021 hypothetical protein W03F11.2 - Caenorhabditis elegans 0.0
blast CAE60309 Hypothetical protein CBG03898 [Caenorhabditis briggsae] 0.0
blast CAE60828 Hypothetical protein CBG04537 [Caenorhabditis briggsae] 0.0
blast CAB07591 Hypothetical protein F21H7.9 [Caenorhabditis elegans] ref|NP_507101.1| Guanylyl CYclase family member (gcy-20) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 0.29
Pfam IPR000719 EMBL-EBI Protein kinase 1.0E-13
Pfam IPR001054 EMBL-EBI Guanylate cyclase 2.1E-86
Pfam IPR001828 EMBL-EBI Extracellular ligand-binding receptor 2.8E-16
Pfam IPR000719 EMBL-EBI Protein kinase 0.018
Pfam IPR000719 EMBL-EBI Protein kinase 1.0E-13
Pfam IPR001054 EMBL-EBI Guanylate cyclase 2.1E-86
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 1.0E-13
Pfam IPR001828 EMBL-EBI Extracellular ligand-binding receptor 6.8E-32
Pfam IPR000719 EMBL-EBI Protein kinase 0.29
Pfam IPR000719 EMBL-EBI Protein kinase 1.0E-13
Pfam IPR001054 EMBL-EBI Guanylate cyclase 2.8E-73
Pfam IPR001828 EMBL-EBI Extracellular ligand-binding receptor 4.4E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490943.3 1 435-457
W03F11.2 1 435-457
SNAP00000024823 2 602-624,760-782
GENEFINDER00000024825 2 585-607,769-791
Sequence
Target Sequence 
>C. ELEGANS:188246_AT
aacttgtcactatattcttttcggatgttgtccaatttaccaccctggccagcaagtgta
ctccactacaagttgtgcaacttctcaacgatttatacacaattttcgacagtattatcg
agcagaacgatgtttacaaggtagaaacaataggcgacgggtacctctgtgtttccggat
taccccaccgaaatggacatgatcatattaagcacatcgcgcggatgtcattggcatttc
tgtctagtttggccgagttccgtgtagcccatatgccaagttccgtagttgccggagtcg
ttggcttaaccatgcctagatactgcctatttggagatgcagttaacacagcaagcagga
tggagagtaatggaaaacccggcagaatccacgtatcatcggaggcaaatcatctgctaa
cacacgtggttggagggttccgaaccgaagaaagaggcgaggtgataattaagggaaaag
gtgttatgaatacgtattggctgctgggagaaaacgattcggtgcctgtcaagtcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTTGTCACTATATTCTTTTCGGA 5 139 3260 Antisense
TCGGATGTTGTCCAATTTACCACCC 354 607 3280 Antisense
AATAGGCGACGGGTACCTCTGTGTT 434 171 3408 Antisense
GGATTACCCCACCGAAATGGACATG 294 507 3436 Antisense
ATCGCGCGGATGTCATTGGCATTTC 634 37 3475 Antisense
TTCTGTCTAGTTTGGCCGAGTTCCG 375 689 3497 Antisense
TTCCGTGTAGCCCATATGCCAAGTT 399 695 3517 Antisense
GGAGTCGTTGGCTTAACCATGCCTA 38 515 3553 Antisense
AACCATGCCTAGATACTGCCTATTT 371 147 3567 Antisense
AAACCCGGCAGAATCCACGTATCAT 19 127 3634 Antisense
AACGATTCGGTGCCTGTCAAGTCTA 110 145 3772 Antisense
Sequence Source Affymetrix Proprietary Database