[Home] | [Total List]

[188243_at]

Description ZK75.2 /REP_DB=WormBase Gene ID /WP=CE02101 /GEN=ins-2 /TR=SW:Q09627 /GB=AAC46745.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 17      6grp_cgc > 38      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 2.7
(-3)
A 		64.7
(1.2)
A 		6.1
(-2.8)
A 		90.8
(3)
A 		88
B 9.7
(-2.8)
A 		15.6
(-2.1)
A 		8.5
(-3)
A 		53.9
(3)
A 		45
C 8.7
(-3)
A 		17.3
(-2.3)
A 		37.7
(-0.6)
A 		81.1
(3)
A 		72
avr 7
(-3) 		32.5
(-0.8) 		17.4
(-2.1) 		75.3
(3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 64.1
(-0.2)
A 		9.2
(-2.7)
A 		19.9
(-2.2)
A 		2.5
(-3)
A 		42
(-1.2)
A 		135.9
(3)
P 		133
B 37.6
(-1.2)
A 		2.2
(-3)
A 		32.7
(-1.4)
A 		25.8
(-1.8)
A 		7.6
(-2.7)
A 		119.1
(3)
P 		117
C 6.9
(-2.9)
A 		37.8
(-1.6)
A 		3.3
(-3)
A 		38.7
(-1.6)
A 		15.8
(-2.5)
A 		152.1
(3)
P 		149
avr 36.2
(-2) 		16.4
(-3) 		18.6
(-2.9) 		22.3
(-2.7) 		21.8
(-2.7) 		135.7
(3) 		119
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1
(-3)
A 		14
(3)
A 		1.6
(-2.7)
A 		13.3
(2.7)
A 		13
B 3.1
(-2.3)
A 		3.8
(-1.9)
A 		2
(-3)
A 		11.5
(3)
A 		10
C 2.9
(-3)
A 		5
(-1.8)
A 		13.1
(2.7)
A 		13.7
(3)
A 		11
avr 2.3
(-3) 		7.6
(0) 		5.6
(-1.1) 		12.8
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 11.8
(-0.9)
A 		3.3
(-2.5)
A 		4.3
(-2.3)
A 		0.6
(-3)
A 		12.7
(-0.8)
A 		33.1
(3)
P 		33
B 13.1
(-1.3)
A 		0.7
(-3)
A 		7.9
(-2)
A 		6.8
(-2.2)
A 		3.1
(-2.7)
A 		44.4
(3)
P 		44
C 2.6
(-2.8)
A 		11.5
(-1.7)
A 		0.8
(-3)
A 		7.8
(-2.2)
A 		5.1
(-2.5)
A 		50.9
(3)
P 		50
avr 9.2
(-2.2) 		5.2
(-2.9) 		4.3
(-3) 		5.1
(-2.9) 		7
(-2.6) 		42.8
(3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188243_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4409
Sequence Type Exemplar sequence
Representative Public ID ZK75.2 NCBI
Target Description ZK75.2 /REP_DB=WormBase Gene ID /WP=CE02101 /GEN=ins-2 /TR=SW:Q09627 /GB=AAC46745.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062793(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062793 NCBI Caenorhabditis elegans INSulin related family member (ins-2) (ins-2) mRNA, complete cds. 11/11 None
SNAP00000034976 ENSEMBL cdna:SNAP chromosome:CEL140:II:5988496:5989140:1 11/11 None
ZK75.2 ENSEMBL cdna:known chromosome:CEL140:II:5988496:5989140:1 gene:ZK75.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5988492-5989137(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ins-2
Ensembl ZK75.2
Entrez Gene 191217 Entrez gene
SwissProt Q09627 EMBL-EBI
WormBase CE02101 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7582 physiological process inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5179 hormone activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46745 Insulin related protein 2 [Caenorhabditis elegans] ref|NP_495194.1| INSulin related family member (ins-2) [Caenorhabditis elegans] sp|Q09627|ILB2_CAEEL Probable insulin-like peptide beta-type 2 precursor 1.0E-57
blast CAE59231 Hypothetical protein CBG02552 [Caenorhabditis briggsae] 1.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR003235 EMBL-EBI Nematode insulin-related peptide, beta type 7.1E-33
Sequence
Target Sequence 
>C. ELEGANS:188243_AT
tgaacgctataatcttctgtctcctcttcacaactgtcactgccacttatgaagttttcg
gaaaaggaatagaacacagaaatgaacatttgatcatcaatcaacttgatatcataccag
ttgagtcaactccaactccaaaccgtgcctcaagagtccagaaacgtctatgcggaagac
gtcttattttattcatgcttgcaacatgtggagaatgtgatacagattcatcagaagacc
tttcgcatatttgctgcataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAACGCTATAATCTTCTGTCTCCT 264 573 14 Antisense
TCACAACTGTCACTGCCACTTATGA 22 629 41 Antisense
GTCACTGCCACTTATGAAGTTTTCG 505 465 49 Antisense
ACTTGATATCATACCAGTTGAGTCA 253 105 117 Antisense
GTTGAGTCAACTCCAACTCCAAACC 523 435 133 Antisense
AACTCCAAACCGTGCCTCAAGAGTC 208 139 147 Antisense
AACCGTGCCTCAAGAGTCCAGAAAC 552 145 154 Antisense
GAGTCCAGAAACGTCTATGCGGAAG 489 399 167 Antisense
GACGTCTTATTTTATTCATGCTTGC 687 377 191 Antisense
GATTCATCAGAAGACCTTTCGCATA 304 431 238 Antisense
GACCTTTCGCATATTTGCTGCATAA 554 383 250 Antisense
Sequence Source Affymetrix Proprietary Database