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[188242_at]

Description T06H11.1 /REP_DB=WormBase Gene ID /WP=CE02331 /GEN=twk-18 /TR=Q22271 /GB=CAA90066.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_highest_8_8 > 57      4grp_high_8_8 > 33      6grp_highest_nonorm > 80      6grp_total > 12      4grp_total > 46      6grp_highest_sub > 02      6grp_cgc > 42      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 317.1
(3)
P 		197.7
(-0.9)
P 		134.1
(-3)
P 		161.8
(-2.1)
P 		183
B 265
(3)
P 		193.4
(-0.3)
P 		159.5
(-1.9)
P 		134.7
(-3)
P 		130
C 275.8
(3)
P 		200.2
(-1.3)
P 		188
(-2)
P 		171.2
(-3)
P 		105
avr 286
(3) 		197.1
(-1.1) 		160.5
(-2.8) 		155.9
(-3) 		130

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 251.2
(1)
P 		314.3
(3)
P 		292.3
(2.3)
P 		184.4
(-1.2)
P 		208.7
(-0.4)
P 		126.7
(-3)
P 		188
B 301.7
(1.6)
P 		355.5
(3)
P 		246.8
(0.3)
P 		164.5
(-1.8)
P 		182.1
(-1.4)
P 		117
(-3)
P 		239
C 294.2
(1)
P 		390.3
(3)
P 		223.6
(-0.4)
P 		246.8
(0.1)
P 		185.9
(-1.2)
P 		96.8
(-3)
P 		294
avr 282.4
(1.2) 		353.4
(3) 		254.2
(0.5) 		198.6
(-0.9) 		192.2
(-1) 		113.5
(-3) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 115.5
(3)
P 		42.9
(-1.7)
P 		35.1
(-2.3)
P 		23.7
(-3)
P 		92
B 84.5
(3)
P 		47.8
(-0.9)
P 		37
(-2.1)
P 		28.7
(-3)
P 		56
C 91.3
(3)
P 		57.6
(-0.2)
P 		65.5
(0.5)
P 		28.9
(-3)
P 		62
avr 97.1
(3) 		49.4
(-1.1) 		45.9
(-1.4) 		27.1
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 46.3
(-1.9)
P 		111.8
(3)
P 		63.6
(-0.6)
P 		46.8
(-1.8)
P 		63
(-0.6)
P 		30.8
(-3)
P 		81
B 105
(1.9)
P 		118.3
(3)
P 		59.9
(-1.7)
P 		43.6
(-3)
P 		74
(-0.6)
P 		43.6
(-3)
P 		75
C 109
(2.3)
P 		119.1
(3)
P 		56.9
(-1.3)
P 		49.6
(-1.8)
P 		60.1
(-1.1)
P 		32.4
(-3)
P 		87
avr 86.8
(0.8) 		116.4
(3) 		60.1
(-1.2) 		46.7
(-2.2) 		65.7
(-0.8) 		35.6
(-3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188242_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16947
Sequence Type Exemplar sequence
Representative Public ID T06H11.1 NCBI
Target Description T06H11.1 /REP_DB=WormBase Gene ID /WP=CE02331 /GEN=twk-18 /TR=Q22271 /GB=CAA90066.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171758(11), NM_171759(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171758 NCBI Caenorhabditis elegans UNCoordinated family member (unc-58) (unc-58) mRNA, complete cds. 11/11 None
NM_171759 NCBI Caenorhabditis elegans UNCoordinated family member (unc-58) (unc-58) mRNA, complete cds. 9/11 None
SNAP00000021207 ENSEMBL cdna:SNAP chromosome:CEL140:X:10105028:10107356:-1 9/11 None
GENEFINDER00000021214 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10105028:10109727:-1 9/11 None
T06H11.1b ENSEMBL cdna:known chromosome:CEL140:X:10104540:10125412:-1 gene:T06H11.1 11/11 None
T06H11.1a ENSEMBL cdna:known chromosome:CEL140:X:10105028:10109797:-1 gene:T06H11.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10104847-10109727(-) 100.0 100.0
Public Domain and Genome References
Ensembl T06H11.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD44149 Hypothetical protein T06H11.1b [Caenorhabditis elegans] ref|NP_741880.1| UNCoordinated family member (unc-58) [Caenorhabditis elegans] 0.0
blast CAA90066 Hypothetical protein T06H11.1a [Caenorhabditis elegans] ref|NP_741881.1| UNCoordinated family member (unc-58) [Caenorhabditis elegans] 0.0
blast CAE58782 Hypothetical protein CBG01980 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741880.1 6 141-163,250-272,279-301,360-382,389-411,416-438
NP_741881.1 6 179-201,288-310,317-339,398-420,427-449,454-476
T06H11.1b 6 141-163,250-272,279-301,360-382,389-411,416-438
T06H11.1a 6 179-201,288-310,317-339,398-420,427-449,454-476
SNAP00000021207 5 55-77,84-106,165-187,194-216,221-243
GENEFINDER00000021214 6 194-216,303-325,332-354,413-435,442-464,469-491
Sequence
Target Sequence 
>C. ELEGANS:188242_AT
gaacttggtctttcattcatgcgtttcattttggtttcaatttgattgtaacagtcggac
tcggagatatcgttgtgactgattacatatttttatcacttatcgttgcatttgtgatag
ttggtctttccgtagtgaccatgtgcgtggatcttgcgtccacacatctcaaggcgtact
tcaccagaattcactactttggtcgagcaaaacgattcttaggaatgagtgaggaactca
aagaaatcgttgctttactgggggcgatgcgacggaaaaaaggcggtaaagttacatgga
atgatgtgcgagacttcctggataacgaactccgcgatcgaccttttgaacctcatgagc
ttctgatgaagctcagatttattgacgaaacatcttctggatatttggaattgtatctgc
atttttgcccaatcttgtttgcgactcatgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTGGTCTTTCATTCATGCGTT 183 351 1325 Antisense
CTTTCCGTAGTGACCATGTGCGTGG 208 221 1450 Antisense
TGTGCGTGGATCTTGCGTCCACACA 614 555 1466 Antisense
TCCACACATCTCAAGGCGTACTTCA 292 589 1483 Antisense
GGCGTACTTCACCAGAATTCACTAC 321 539 1497 Antisense
GTTGCTTTACTGGGGGCGATGCGAC 262 437 1573 Antisense
GATGTGCGAGACTTCCTGGATAACG 474 407 1627 Antisense
TGGATAACGAACTCCGCGATCGACC 651 547 1643 Antisense
GATCGACCTTTTGAACCTCATGAGC 399 417 1660 Antisense
GTATCTGCATTTTTGCCCAATCTTG 336 455 1737 Antisense
CCCAATCTTGTTTGCGACTCATGCG 637 257 1752 Antisense
Sequence Source Affymetrix Proprietary Database