[Home] | [Total List]

[188236_s_at]

Description ZK1127.1 /REP_DB=WormBase Gene ID /WP=CE05121 /GEN=nos-2 /TR=Q23406 /GB=AAB93424.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 36      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 90.9
(3)
A 		89.2
(2.9)
A 		39.3
(-1.1)
A 		15.6
(-3)
A 		75
B 57
(2.4)
A 		62.4
(3)
A 		5.9
(-3)
A 		41.6
(0.8)
A 		57
C 83.7
(0)
A 		116.4
(3)
A 		50.5
(-3)
A 		94.1
(1)
A 		66
avr 77.2
(1.7) 		89.3
(3) 		31.9
(-3) 		50.4
(-1.1) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 575
1 2 3 4 5 6 range
A 78
(-2.5)
A 		61.5
(-2.8)
A 		43.2
(-3)
A 		59.4
(-2.8)
A 		315.6
(0.7)
P 		490.8
(3)
P 		448
B 43.4
(-3)
A 		45.4
(-3)
A 		66.3
(-2.7)
A 		60.7
(-2.8)
A 		339.4
(0.3)
P 		589
(3)
P 		546
C 14.5
(-3)
A 		43
(-2.6)
A 		68.4
(-2.2)
A 		34.1
(-2.7)
A 		282.7
(0.8)
P 		440.4
(3)
P 		426
avr 45.3
(-3) 		50
(-2.9) 		59.3
(-2.8) 		51.4
(-2.9) 		312.6
(0.5) 		506.7
(3) 		461
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 33.1
(3)
A 		19.4
(0.3)
A 		10.3
(-1.4)
A 		2.3
(-3)
A 		31
B 18.2
(3)
A 		15.4
(2)
A 		1.4
(-3)
A 		8.9
(-0.3)
A 		17
C 27.7
(1)
A 		33.5
(3)
A 		17.6
(-2.4)
A 		15.9
(-3)
A 		18
avr 26.3
(3) 		22.8
(1.8) 		9.8
(-2.7) 		9
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 14.4
(-2.7)
A 		21.9
(-2.3)
A 		9.4
(-3)
A 		15.1
(-2.7)
A 		95.2
(1.7)
P 		119.5
(3)
P 		110
B 15.1
(-3)
A 		15.1
(-3)
A 		16.1
(-3)
A 		16.1
(-3)
A 		137.9
(0.6)
P 		219.6
(3)
P 		205
C 5.4
(-3)
A 		13.1
(-2.7)
A 		17.4
(-2.5)
A 		6.9
(-2.9)
A 		91.5
(0.6)
P 		147.4
(3)
P 		142
avr 11.6
(-3) 		16.7
(-2.8) 		14.3
(-2.9) 		12.7
(-3) 		108.2
(0.8) 		162.2
(3) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188236_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4564
Sequence Type Exemplar sequence
Representative Public ID ZK1127.1 NCBI
Target Description ZK1127.1 /REP_DB=WormBase Gene ID /WP=CE05121 /GEN=nos-2 /TR=Q23406 /GB=AAB93424.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063051(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063051 NCBI Caenorhabditis elegans NanOS related family member (nos-2) (nos-2) mRNA, complete cds. 11/11 A 
SNAP00000033597 ENSEMBL cdna:SNAP chromosome:CEL140:II:7065604:7066575:1 11/11 None
GENEFINDER00000033603 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7065604:7066575:1 11/11 None
ZK1127.1 ENSEMBL cdna:known chromosome:CEL140:II:7065604:7066831:1 gene:ZK1127.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063059 3/11 Cross Hyb Matching Probes None
T02G5.11 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7065599-7066571(+) 100.0 100.0
chrII:7078692-7081661(-) 67.44 67.44
Public Domain and Genome References
Gene Title
Gene Symbol nos-2
Ensembl ZK1127.1
Entrez Gene 174158 Entrez gene
SwissProt Q23406 EMBL-EBI
WormBase CE05121 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6445 regulation of translation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3723 RNA binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB93424 Nanos related protein 2 [Caenorhabditis elegans] ref|NP_495452.1| NanOS related family member (nos-2) [Caenorhabditis elegans] 1.0E-136
blast NP_495460 T02G5.11 [Caenorhabditis elegans] gb|AAA82402.2| Hypothetical protein T02G5.11 [Caenorhabditis elegans] 1.0E-98
blast CAE56903 Hypothetical protein CBG24744 [Caenorhabditis briggsae] 7.0E-67
Protein Domains
Database ID Description E-Value
Pfam IPR008705 EMBL-EBI Nanos RNA-binding 2.5E-21
Sequence
Target Sequence 
>C. ELEGANS:188236_S_AT
aatggtcaccaatgactccatgctcaatagaaagaccggagacctcaacatcatcaatct
tctcgtttgaagctagacccatcaaaacgccgccacctgccgaatatcttcgacttccga
cattcctgtcaacgaataattccggatttttcgattcagttgtcgcttcggatttcaatt
tgtacgggaagttcaatgattggttgaatgacagcaagcctcgcagtggatcgtttgcga
ttgaatctgctgaagagctcgcgaggaatccaagagaaactcgctccgagcccgaagtgc
catcattgttcaaaaggcgtgaatatggatgtggatactgtcgttccgttggatatatgc
gatgggaaacgcatacacgtaagaaatgcgacaagctcagctcattggctccatgtaaaa
tttgtggagctcgcggtgaaatgaatcacaccgagacgtactgcccaatgaagccgtcga
gccagttgttcttcaatgaggatttcagccgagacttcgaaaaccgacgattccagcgca
gtcgttatcaattttacaagcattcctcattaattcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGTCACCAATGACTCCATGCTC 261 163 182 Antisense
GACTCCATGCTCAATAGAAAGACCG 676 373 195 Antisense
GAAAGACCGGAGACCTCAACATCAT 191 361 211 Antisense
ATCATCAATCTTCTCGTTTGAAGCT 172 31 231 Antisense
CGAGACGTACTGCCCAATGAAGCCG 212 251 633 Antisense
CGTCGAGCCAGTTGTTCTTCAATGA 477 243 656 Antisense
ATGAGGATTTCAGCCGAGACTTCGA 106 47 677 Antisense
GACTTCGAAAACCGACGATTCCAGC 15 371 694 Antisense
GACGATTCCAGCGCAGTCGTTATCA 173 379 707 Antisense
GCAGTCGTTATCAATTTTACAAGCA 641 311 719 Antisense
TACAAGCATTCCTCATTAATTCAGA 33 641 736 Antisense
Sequence Source Affymetrix Proprietary Database