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[188235_at]

Description F40F12.3_rc /REP_DB=WormBase Gene ID /WP=CE00618 /TR=Q20213 /GB=CAA82935.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 68      4grp_total > 10      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 8.1
(-3)
A 		9.6
(1.7)
A 		10
(3)
A 		8.5
(-1.7)
A 		2
B 5
(-2.8)
A 		7.4
(3)
A 		4.9
(-3)
A 		6.6
(1.1)
A 		3
C 5
(-3)
A 		12.1
(-2.3)
A 		5.5
(-3)
A 		67.8
(3)
A 		63
avr 6
(-3) 		9.7
(-2) 		6.8
(-2.8) 		27.6
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 15.3
(3)
A 		4.2
(-3)
A 		5.4
(-2.4)
A 		5.8
(-2.1)
A 		9.9
(0.1)
A 		6.2
(-1.9)
A 		11
B 5.2
(-2.6)
A 		3.6
(-2.9)
A 		4.7
(-2.7)
A 		3.1
(-3)
A 		8
(-2.1)
A 		37.1
(3)
A 		34
C 6.7
(-0.5)
A 		7.9
(0.6)
A 		6.3
(-0.9)
A 		10.4
(3)
A 		4.1
(-3)
A 		10
(2.6)
A 		6
avr 9.1
(-1.1) 		5.2
(-3) 		5.5
(-2.9) 		6.4
(-2.4) 		7.3
(-2) 		17.8
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.9
(3)
A 		2.1
(0.2)
A 		2.6
(1.9)
A 		1.2
(-3)
A 		2
B 1.6
(1.3)
A 		1.8
(3)
A 		1.1
(-3)
A 		1.4
(-0.4)
A 		1
C 1.7
(-3)
A 		3.5
(-1.9)
A 		1.9
(-2.9)
A 		11.4
(3)
A 		10
avr 2.1
(-2.6) 		2.5
(-1.7) 		1.9
(-3) 		4.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.8
(2.3)
A 		1.5
(-2)
A 		1.2
(-3)
A 		1.5
(-2)
A 		3
(3)
A 		1.5
(-2)
A 		2
B 1.8
(-2.5)
A 		1.2
(-2.8)
A 		1.1
(-2.9)
A 		0.8
(-3)
A 		3.3
(-1.8)
A 		13.8
(3)
A 		13
C 2.5
(0.6)
A 		2.4
(0.3)
A 		1.6
(-2.1)
A 		2.1
(-0.6)
A 		1.3
(-3)
A 		3.3
(3)
A 		2
avr 2.4
(-1.7) 		1.7
(-2.5) 		1.3
(-3) 		1.5
(-2.8) 		2.5
(-1.5) 		6.2
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188235_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28125
Sequence Type Exemplar sequence
Representative Public ID F40F12.3 NCBI
Target Description F40F12.3_rc /REP_DB=WormBase Gene ID /WP=CE00618 /TR=Q20213 /GB=CAA82935.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F40F12.3
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F40F12.3 F40F12.3_rc /REP_DB=WormBase Gene ID /WP=CE00618 /TR=Q20213 /GB=CAA82935.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066799 11/11 Negative Strand Matching Probes A 
GENEFINDER00000010935 11/11 Negative Strand Matching Probes None
SNAP00000010929 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9918531-9919955(+) 85.99 100.0
Public Domain and Genome References
Ensembl F40F12.3
Sequence
Target Sequence 
>C. ELEGANS:188235_AT
cagatgagttgtctcgagtccacgcaatcaaggaaggtttcatctttcttcaacttgcaa
gagatgtacggcgttcggtaggatggagacattttgtacggcttgcatcctcctgtgcaa
ttcacgacgcgtttgttgattcgtaagcaaaacagctcccgagcttcttccgtttccatg
cactcagtggagatgtccttgattagagcttccacaccattgtagacattgttaacaccc
gttctgagctgtggatttatgaagagctgtcgcagcttagaggtatccttgaactcgttc
tttccgtcgaaaatcttccgcagctcttcatgccttggctccatagaaatgcattgctgc
aagtgcttgttaaatcctgatcttttcaacatttgaagagaggcatttaaccagcacgat
gtgtcagggttcagaagacgcatgcagctggttgtgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGATGAGTTGTCTCGAGTCCACGC 25 207 365 Antisense
GAGACATTTTGTACGGCTTGCATCC 511 391 450 Antisense
TTGCATCCTCCTGTGCAATTCACGA 709 703 467 Antisense
GCAAAACAGCTCCCGAGCTTCTTCC 344 319 511 Antisense
TTCCGTTTCCATGCACTCAGTGGAG 285 699 532 Antisense
AGATGTCCTTGATTAGAGCTTCCAC 647 67 555 Antisense
GAGCTTCCACACCATTGTAGACATT 396 389 570 Antisense
AACACCCGTTCTGAGCTGTGGATTT 703 135 598 Antisense
GCTGTCGCAGCTTAGAGGTATCCTT 498 295 630 Antisense
CTCTTCATGCCTTGGCTCCATAGAA 702 229 688 Antisense
GAAGACGCATGCAGCTGGTTGTGAA 235 339 798 Antisense
Sequence Source Affymetrix Proprietary Database