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[188233_at]

Description F54F7.1 /REP_DB=WormBase Gene ID /WP=CE03416 /GEN=taf-8.1 /TR=Q20788 /GB=CAA91754.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 23      6grp_cgc > 47      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 139
1 2 3 4 range
A 74.3
(3)
A 		24.7
(-1.9)
A 		14
(-3)
A 		44.9
(0.1)
A 		60
B 148.4
(3)
A 		9.5
(-3)
A 		9.5
(-3)
A 		100
(0.9)
A 		139
C 107.5
(2.3)
A 		10
(-3)
A 		9.3
(-3)
A 		119.9
(3)
A 		111
avr 110.1
(3) 		14.7
(-2.8) 		10.9
(-3) 		88.3
(1.7) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 72.1
(-0.7)
A 		60.9
(-2.8)
A 		75.2
(-0.2)
A 		84.1
(1.5)
A 		92.2
(3)
A 		60
(-3)
A 		32
B 29.6
(-3)
A 		87.9
(2.2)
A 		78.5
(1.4)
A 		49.7
(-1.2)
A 		37.2
(-2.3)
A 		96.3
(3)
A 		67
C 89.9
(-1)
A 		81.3
(-1.5)
A 		88.9
(-1)
A 		106.5
(-0.1)
A 		53.8
(-3)
A 		161
(3)
M 		107
avr 63.9
(-2.6) 		76.7
(-0.9) 		80.9
(-0.3) 		80.1
(-0.4) 		61.1
(-3) 		105.8
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 27.1
(3)
A 		5.4
(-2.6)
A 		3.7
(-3)
A 		6.6
(-2.3)
A 		23
B 47.3
(3)
A 		2.3
(-3)
A 		2.2
(-3)
A 		21.3
(-0.5)
A 		45
C 35.6
(3)
A 		2.9
(-3)
A 		3.2
(-2.9)
A 		20.2
(0.2)
A 		33
avr 36.7
(3) 		3.5
(-2.9) 		3
(-3) 		16
(-0.7) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 13.3
(-3)
A 		21.7
(0.5)
A 		16.4
(-1.7)
A 		21.3
(0.3)
A 		27.8
(3)
A 		14.6
(-2.5)
A 		15
B 10.3
(-3)
A 		29.3
(1.5)
A 		19.1
(-0.9)
A 		13.2
(-2.3)
A 		15.1
(-1.9)
A 		35.9
(3)
A 		26
C 33.3
(-0.4)
A 		24.8
(-1.8)
A 		22.6
(-2.1)
A 		21.4
(-2.3)
A 		17.4
(-3)
A 		53.9
(3)
M 		37
avr 19
(-2.9) 		25.3
(-0.5) 		19.4
(-2.7) 		18.6
(-3) 		20.1
(-2.4) 		34.8
(3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188233_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17051
Sequence Type Exemplar sequence
Representative Public ID F54F7.1 NCBI
Target Description F54F7.1 /REP_DB=WormBase Gene ID /WP=CE03416 /GEN=taf-8.1 /TR=Q20788 /GB=CAA91754.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077575(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077575 NCBI Caenorhabditis elegans TAF (TBP-associated transcription factor) family member (taf-7.1) (taf-7.1) mRNA, complete cds. 11/11 None
SNAP00000009556 ENSEMBL cdna:SNAP chromosome:CEL140:X:11836117:11837385:-1 11/11 None
GENEFINDER00000009569 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11836117:11837385:-1 11/11 None
F54F7.1 ENSEMBL cdna:known chromosome:CEL140:X:11836117:11837385:-1 gene:F54F7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11836116-11837385(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol taf-7.1
Ensembl F54F7.1
Entrez Gene 192053 Entrez gene
SwissProt Q20788 EMBL-EBI
WormBase CE03416 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.26976.1.S1_AT similar to TATA box binding protein-associated factor, RNA polymerase II, Q cfa
CANINE_2:CFAAFFX.26977.1.S1_S_AT similar to TATA box binding protein-associated factor, RNA polymerase II, Q cfa
HG-U133_PLUS_2:224380_S_AT TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa hs
HG-U133B:224380_S_AT TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa hs
HG-U133_PLUS_2:220325_AT TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa hs
HG-U133A:220325_AT TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa hs
HG-FOCUS:220325_AT TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa hs
HG-U133A_2:220325_AT TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa hs
HU35KSUBD:RC_AA401392_AT TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa hs
U133_X3P:G13603872_3P_S_AT TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa hs
U133_X3P:G13376332_3P_AT TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa hs
HG-U95B:52496_AT TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, 50kDa hs
MOUSE430_2:1420433_AT TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOE430A:1420433_AT TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
MOUSE430A_2:1420433_AT TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor mm
RG-U34B:RC_AA901064_AT similar to TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor rn
RAE230B:1384351_AT similar to TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor rn
RAT230_2:1384351_AT similar to TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
45449 regulation of transcription inferred from electronic annotation QuickGO AmiGO
122 negative regulation of transcription from RNA polymerase II promoter inferred from sequence similarity QuickGO AmiGO
45944 positive regulation of transcription from RNA polymerase II promoter inferred from sequence similarity QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5669 transcription factor TFIID complex inferred from sequence similarity QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
35034 histone acetyltransferase regulator activity inferred from sequence similarity QuickGO AmiGO
3713 transcription coactivator activity inferred from sequence similarity QuickGO AmiGO
3702 RNA polymerase II transcription factor activity inferred from sequence similarity QuickGO AmiGO
5515 protein binding inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91754 Hypothetical protein F54F7.1 [Caenorhabditis elegans] ref|NP_509976.1| TAF (TBP-associated transcription factor) family member (taf-7.1) [Caenorhabditis elegans] 1.0E-114
blast CAE69420 Hypothetical protein CBG15584 [Caenorhabditis briggsae] 3.0E-42
blast CAC35845 Hypothetical protein Y111B2A.16 [Caenorhabditis elegans] ref|NP_499647.1| TAF (TBP-associated transcription factor) family member (taf-7.2) [Caenorhabditis elegans] 8.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR006751 EMBL-EBI TAFII55 protein conserved region 3.3E-115
Sequence
Target Sequence 
>C. ELEGANS:188233_AT
gacttggaaaccagattttgcctgcaaaaattcttgatcttccaactattaacgaggtgc
acaaaactctagataatagcacattgtacaaagtaacagatgtttctcaaatgatcatat
gtgaaggagccatgccaatcccgaaagctgagcggaaaaagttgaatccggaaggtattg
aaaatcgggagccaaaaatagaagtggaaggaagtggagtagaaaacaaaacgaatgttc
aatcaaaaactgcacgtcaattggcaaaagagaaagtcaaagaataccactacccccacg
gaatcacaccaccgatgaaaaatgccaaaaaacgtagatttagaaagaaaaaggagaaaa
agacaatggctgttgaagaaattgaaatagaattaaaacgtctccttcgatctgatttgg
aagcccagtctgtcagatggaaagtagtggatgatgatgaaacgaatcctgaggacgagg
acattgaagtgtatgataatgacgacggtagtgatctggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTGGAAACCAGATTTTGCCTGC 14 371 209 Antisense
GCCTGCAAAAATTCTTGATCTTCCA 238 283 228 Antisense
GATCTTCCAACTATTAACGAGGTGC 153 419 244 Antisense
TGTGAAGGAGCCATGCCAATCCCGA 603 555 328 Antisense
CCATGCCAATCCCGAAAGCTGAGCG 671 271 338 Antisense
CAAAAACTGCACGTCAATTGGCAAA 189 191 452 Antisense
ATCACACCACCGATGAAAAATGCCA 698 27 511 Antisense
GAATTAAAACGTCTCCTTCGATCTG 303 193 598 Antisense
ACGTCTCCTTCGATCTGATTTGGAA 392 93 606 Antisense
GATTTGGAAGCCCAGTCTGTCAGAT 639 425 622 Antisense
TAATGACGACGGTAGTGATCTGGAT 412 635 705 Antisense
Sequence Source Affymetrix Proprietary Database