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[188232_at]

Description C10A4.7_rc /REP_DB=WormBase Gene ID /WP=CE02475 /TR=Q17893 /GB=AAC46521.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 80      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 17.9
(-3)
A 		20.1
(-2.8)
A 		21.2
(-2.8)
A 		102.1
(3)
A 		84
B 21.9
(-1.5)
A 		23.8
(-1.3)
A 		5.3
(-3)
A 		70.4
(3)
A 		65
C 34.6
(3)
A 		1.9
(-3)
A 		2.6
(-2.9)
A 		11.8
(-1.2)
A 		33
avr 24.8
(-1.2) 		15.3
(-2.4) 		9.7
(-3) 		61.4
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 2.9
(-2.8)
A 		18
(1.3)
A 		2.2
(-2.9)
A 		2
(-3)
A 		22.8
(2.5)
A 		24.5
(3)
A 		23
B 5.7
(-1.8)
A 		20.3
(2.4)
A 		19
(2.1)
A 		22.3
(3)
A 		1.4
(-3)
A 		1.6
(-2.9)
A 		21
C 19.6
(-1.3)
A 		37.2
(0.6)
A 		7.7
(-2.5)
A 		59.6
(3)
A 		3.4
(-3)
A 		19.4
(-1.3)
A 		56
avr 9.4
(-2.9) 		25.2
(2.1) 		9.6
(-2.9) 		28
(3) 		9.2
(-3) 		15.2
(-1.1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 6.5
(-1.8)
A 		4.4
(-3)
A 		5.5
(-2.4)
A 		15
(3)
A 		11
B 7
(-0.5)
A 		5.9
(-1)
A 		1.2
(-3)
A 		15
(3)
A 		14
C 11.5
(3)
A 		0.6
(-3)
A 		0.9
(-2.8)
A 		2
(-2.2)
A 		11
avr 8.3
(1.2) 		3.6
(-2.2) 		2.5
(-3) 		10.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.5
(-3)
A 		6.4
(2.5)
A 		0.5
(-3)
A 		0.5
(-3)
A 		6.9
(3)
A 		6
(2.2)
A 		6
B 2
(-1.6)
A 		6.8
(3)
A 		4.6
(0.9)
A 		5.9
(2.1)
A 		0.6
(-3)
A 		0.6
(-3)
A 		6
C 7.3
(0.4)
A 		11.3
(2.6)
A 		2
(-2.5)
A 		12
(3)
A 		1.1
(-3)
A 		6.5
(-0)
A 		11
avr 3.3
(-2.1) 		8.2
(3) 		2.4
(-3) 		6.1
(0.8) 		2.9
(-2.5) 		4.4
(-0.9) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188232_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28162
Sequence Type Exemplar sequence
Representative Public ID C10A4.7 NCBI
Target Description C10A4.7_rc /REP_DB=WormBase Gene ID /WP=CE02475 /TR=Q17893 /GB=AAC46521.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C10A4.7
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C10A4.7 C10A4.7_rc /REP_DB=WormBase Gene ID /WP=CE02475 /TR=Q17893 /GB=AAC46521.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076853 11/11 Negative Strand Matching Probes A 
SNAP00000027709 10/11 Negative Strand Matching Probes None
GENEFINDER00000027713 10/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7413613-7414980(+) 100.0 100.0
Public Domain and Genome References
Ensembl C10A4.7
Sequence
Target Sequence 
>C. ELEGANS:188232_AT
cacaagttgtgcggcgatgtcatcccatttcgcccagatttcatctttgtgcaagtcgtc
gtatttcttgacaattttaacgcctaggatcaggaatgtgagcatcgtgaagaaagtgat
agtgcccgatgcaagaagaagaatgaaggcagctgcgacgttggcattctcgtcttccca
gcagagatggtgaccgcatgttcccattatgatgttgtgaactgtgttgatgtaatagtc
agtgttagtaacaattagaagaatcgaactgttgatgaagatgtttttgaagatggtgat
aagcaggaaggcgaagagaatgcggctgttcaaaatttgaactgatgtgatgacaactcc
aatagtgaatgaaacacatgacaaagttagatcaacgccggctgtgatttgaacgaagtc
acgaatagttttggatacaaaacaatagcaaaaaaaaaaacaaatttcttggcaggggaa
atatgtgtacatatcagtgctgtgcggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAAGTTGTGCGGCGATGTCATCC 355 193 22 Antisense
TTCGCCCAGATTTCATCTTTGTGCA 609 697 50 Antisense
TCTTTGTGCAAGTCGTCGTATTTCT 227 615 65 Antisense
AAGAAAGTGATAGTGCCCGATGCAA 145 153 131 Antisense
TGAAGGCAGCTGCGACGTTGGCATT 360 575 165 Antisense
ATTCTCGTCTTCCCAGCAGAGATGG 695 9 187 Antisense
GCAGAGATGGTGACCGCATGTTCCC 233 313 202 Antisense
GACCGCATGTTCCCATTATGATGTT 639 381 213 Antisense
GACAAAGTTAGATCAACGCCGGCTG 90 365 401 Antisense
ACGCCGGCTGTGATTTGAACGAAGT 403 91 416 Antisense
GTGTACATATCAGTGCTGTGCGGCT 67 485 506 Antisense
Sequence Source Affymetrix Proprietary Database