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[188231_s_at] synaptosomal associated protein

Description K02D10.5 /REP_DB=WormBase Gene ID /WP=CE17152 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=synaptosomal associated protein
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 31      6grp_total > 24      4grp_total > 23      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 280
1 2 3 4 range
A 957.7
(3)
P 		799.8
(-3)
P 		803.2
(-2.9)
P 		915.4
(1.4)
P 		158
B 982.8
(3)
P 		742.6
(-3)
P 		827.6
(-0.9)
P 		982.6
(3)
P 		240
C 894.7
(3)
P 		774.2
(-0.8)
P 		703.1
(-3)
P 		877.8
(2.5)
P 		192
avr 945.1
(3) 		772.2
(-3) 		778
(-2.8) 		925.3
(2.3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 594
1 2 3 4 5 6 range
A 1200.9
(3)
P 		1109
(2)
P 		857.3
(-0.9)
P 		864.5
(-0.8)
P 		685.5
(-2.8)
P 		671.4
(-3)
P 		530
B 1235.8
(3)
P 		1239.3
(3)
P 		997.2
(0.6)
P 		956.5
(0.1)
P 		645.4
(-3)
P 		724.9
(-2.2)
P 		594
C 899.6
(-0.7)
P 		1227.2
(3)
P 		1035.8
(0.8)
P 		793.7
(-1.9)
P 		760
(-2.3)
P 		697.5
(-3)
P 		530
avr 1112.1
(2) 		1191.8
(3) 		963.4
(0.2) 		871.6
(-0.9) 		697
(-3) 		697.9
(-3) 		495
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 348.7
(3)
P 		173.6
(-1.9)
P 		210
(-0.9)
P 		134
(-3)
P 		215
B 313.4
(3)
P 		183.4
(-3)
P 		191.8
(-2.6)
P 		209.4
(-1.8)
P 		130
C 296.2
(3)
P 		222.6
(0)
P 		245.1
(0.9)
P 		148
(-3)
P 		148
avr 319.4
(3) 		193.2
(-1.9) 		215.6
(-1) 		163.8
(-3) 		156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 270
1 2 3 4 5 6 range
A 221.4
(-1.5)
P 		394.4
(3)
P 		186.7
(-2.4)
P 		219.3
(-1.6)
P 		206.9
(-1.9)
P 		163.5
(-3)
P 		231
B 430
(3)
P 		412.5
(2.4)
P 		242.1
(-3)
P 		253.3
(-2.6)
P 		262.2
(-2.4)
P 		270.3
(-2.1)
P 		188
C 333.5
(1.9)
P 		374.5
(3)
P 		263.6
(-0.1)
P 		159.6
(-3)
P 		245.9
(-0.6)
P 		233.5
(-0.9)
P 		215
avr 328.3
(0.9) 		393.8
(3) 		230.8
(-2.3) 		210.7
(-3) 		238.3
(-2.1) 		222.4
(-2.6) 		183
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188231_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6389
Sequence Type Exemplar sequence
Representative Public ID K02D10.5 NCBI
Target Description K02D10.5 /REP_DB=WormBase Gene ID /WP=CE17152 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=synaptosomal associated protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066539(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066539 NCBI Caenorhabditis elegans K02D10.5 (K02D10.5) mRNA, complete cds. 11/11 None
SNAP00000017002 ENSEMBL cdna:SNAP chromosome:CEL140:III:8776168:8777450:1 11/11 None
GENEFINDER00000017008 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8776168:8777450:1 11/11 None
K02D10.5 ENSEMBL cdna:known chromosome:CEL140:III:8776163:8777800:1 gene:K02D10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8776163-8777446(+) 100.0 100.0
Public Domain and Genome References
Gene Title synaptosomal associated protein
Ensembl K02D10.5
Entrez Gene 176233 Entrez gene
SwissProt P83351 EMBL-EBI
WormBase CE17152 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.20894.1.S1_AT similar to synaptosomal-associated protein 29 cfa
CANINE_2:CFAAFFX.23394.1.S1_AT similar to synaptosomal-associated protein 29 cfa
DROSOPHILA_2:1625742_AT ubisnap dm
DROSGENOME1:153505_AT ubisnap dm
CHICKEN:GGAAFFX.876.1.S1_S_AT synaptosomal-associated protein, 29kDa gga
HG-U133_PLUS_2:218327_S_AT synaptosomal-associated protein, 29kDa hs
HG-U133A:218327_S_AT synaptosomal-associated protein, 29kDa hs
HG-FOCUS:218327_S_AT synaptosomal-associated protein, 29kDa hs
HG-U133A_2:218327_S_AT synaptosomal-associated protein, 29kDa hs
HU35KSUBA:R51970_AT synaptosomal-associated protein, 29kDa hs
HU35KSUBB:RC_T16605_AT synaptosomal-associated protein, 29kDa hs
HU35KSUBB:RC_AA150182_AT synaptosomal-associated protein, 29kDa hs
HU35KSUBC:RC_N58239_AT synaptosomal-associated protein, 29kDa hs
U133_X3P:G4759153_3P_A_AT synaptosomal-associated protein, 29kDa hs
U133_X3P:HS.194714.0.S2_3P_AT synaptosomal-associated protein, 29kDa hs
HG-U133_PLUS_2:222597_AT synaptosomal-associated protein, 29kDa hs
HG-U133B:222597_AT synaptosomal-associated protein, 29kDa hs
HG-U95B:45384_AT synaptosomal-associated protein, 29kDa hs
HG-U95B:45385_G_AT synaptosomal-associated protein, 29kDa hs
HG-U95B:46617_AT synaptosomal-associated protein, 29kDa hs
HG-U95B:49337_AT synaptosomal-associated protein, 29kDa hs
HG-U133_PLUS_2:239084_AT Synaptosomal-associated protein, 29kDa hs
HG-U133B:239084_AT Synaptosomal-associated protein, 29kDa hs
HG-U95B:42341_AT Synaptosomal-associated protein, 29kDa hs
U133_X3P:239084_3P_AT Synaptosomal-associated protein, 29kDa hs
HU35KSUBD:RC_H94650_AT Synaptosomal-associated protein, 29kDa hs
MG-U74BV2:117199_AT synaptosomal-associated protein mm
MG-U74CV2:168245_I_AT synaptosomal-associated protein mm
MOE430A:1423354_AT synaptosomal-associated protein mm
MOUSE430A_2:1423354_AT synaptosomal-associated protein mm
MOUSE430_2:1423354_AT synaptosomal-associated protein mm
MOE430A:1423355_AT synaptosomal-associated protein mm
MOUSE430A_2:1423355_AT synaptosomal-associated protein mm
MOUSE430_2:1423355_AT synaptosomal-associated protein mm
MOE430A:1423356_AT synaptosomal-associated protein mm
MOUSE430A_2:1423356_AT synaptosomal-associated protein mm
MOUSE430_2:1423356_AT synaptosomal-associated protein mm
MU19KSUBB:TC32202_AT Synaptosomal-associated protein, mRNA (cDNA clone MGC:41067 IMAGE:5118167) mm
RAE230A:1370766_AT synaptosomal-associated protein 29 rn
RAT230_2:1370766_AT synaptosomal-associated protein 29 rn
RG-U34A:AF035822_AT synaptosomal-associated protein 29 rn
RG-U34B:RC_AI010450_AT synaptosomal-associated protein 29 rn
RAE230A:1373213_AT synaptosomal-associated protein 29 rn
RAT230_2:1373213_AT synaptosomal-associated protein 29 rn
RAE230A:1369316_S_AT synaptosomal-associated protein 29 rn
RAT230_2:1369316_S_AT synaptosomal-associated protein 29 rn
Protein Similarities
Method ID Description E-Value
blast AAK84538 Hypothetical protein K02D10.5 [Caenorhabditis elegans] ref|NP_498940.1| K02D10.5 [Caenorhabditis elegans] sp|P83351|YMQ5_CAEEL Hypothetical protein K02D10.5 on chromosome III 1.0E-143
blast CAE62748 Hypothetical protein CBG06912 [Caenorhabditis briggsae] 1.0E-130
blast EAL24650 GA10816-PA [Drosophila pseudoobscura] 4.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR000727 EMBL-EBI Target SNARE coiled-coil domain 8.1E-15
Sequence
Target Sequence 
>C. ELEGANS:188231_S_AT
agagccgacggaaactccgactgtcccgcaatccaaatcagcatcccgtttgtcggaaac
cgctaccaacctctccagcggtggtggatccgcaacattctctggaccatctggacaacg
aaccttgaccgaatctagtcgttcggcaattaaaggtacacgttgggaagctatggataa
tcaaattgatgagaatcttgacatgatgtccgccaatcttcggaacttgcaacgtcttgg
agccgatctcggaaaagaggtcgattcacaaaatgagatgctcgatcgtattcaatacaa
agctgaacgtaacgatggaattgttagagatcaggataaacaaatgcaaaagattctggg
aactggtgcatcaacaagccaaactacagccgagtctctgaccccaagcatggatact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCCGACGGAAACTCCGACTGTC 674 69 381 Antisense
ACTGTCCCGCAATCCAAATCAGCAT 111 97 400 Antisense
AATCAGCATCCCGTTTGTCGGAAAC 573 167 416 Antisense
CGGTGGTGGATCCGCAACATTCTCT 388 243 459 Antisense
GACCATCTGGACAACGAACCTTGAC 279 383 485 Antisense
GAACCTTGACCGAATCTAGTCGTTC 20 345 500 Antisense
TTGACATGATGTCCGCCAATCTTCG 592 705 578 Antisense
ATCTTCGGAACTTGCAACGTCTTGG 202 31 596 Antisense
AACGTCTTGGAGCCGATCTCGGAAA 113 145 611 Antisense
GCCAAACTACAGCCGAGTCTCTGAC 196 279 758 Antisense
GTCTCTGACCCCAAGCATGGATACT 98 469 774 Antisense
Sequence Source Affymetrix Proprietary Database