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[188222_s_at]

Description W10D5.3C /REP_DB=WormBase Gene ID /WP=CE14784 /GEN=gei-17 /TR=Q94361 /GB=CAB02133.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 91      6grp_total > 86      4grp_total > 24      6grp_highest_sub > In      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 40.2
(-3)
P 		76.6
(-0.4)
P 		122.7
(3)
P 		112.6
(2.3)
P 		83
B 56.1
(-3)
P 		93.7
(0.7)
P 		94.4
(0.8)
P 		116.3
(3)
P 		60
C 60.2
(-3)
P 		62.1
(-2.8)
P 		100.4
(0.8)
P 		123.4
(3)
P 		63
avr 52.2
(-3) 		77.5
(-0.7) 		105.8
(1.9) 		117.4
(3) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 516
1 2 3 4 5 6 range
A 43.6
(-2.9)
P 		33.8
(-3)
P 		83
(-2.4)
P 		192.8
(-0.9)
P 		229.9
(-0.5)
P 		497.1
(3)
P 		463
B 55.4
(-3)
P 		55.4
(-3)
P 		99.9
(-2.4)
P 		169.3
(-1.5)
P 		241.9
(-0.6)
P 		515
(3)
P 		460
C 57
(-3)
P 		75.1
(-2.8)
P 		99.6
(-2.5)
P 		134.1
(-2.1)
P 		282.9
(-0.2)
P 		549.8
(3)
P 		493
avr 52
(-3) 		54.8
(-3) 		94.2
(-2.5) 		165.4
(-1.5) 		251.6
(-0.4) 		520.6
(3) 		469
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 14.6
(-3)
P 		16.6
(-2.3)
P 		32.1
(3)
P 		16.5
(-2.3)
P 		18
B 17.9
(-3)
P 		23.2
(1.6)
P 		21.9
(0.5)
P 		24.8
(3)
P 		7
C 19.9
(-2.3)
P 		17.9
(-3)
P 		35
(3)
P 		20.8
(-2)
P 		17
avr 17.5
(-3) 		19.2
(-2.2) 		29.7
(3) 		20.7
(-1.4) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 8
(-3)
P 		12
(-2.8)
P 		18.1
(-2.5)
P 		48.9
(-0.8)
P 		69.4
(0.3)
P 		121
(3)
P 		113
B 19.3
(-3)
P 		18.4
(-3)
P 		24.3
(-2.8)
P 		44.8
(-2.1)
P 		98.3
(-0.2)
P 		192
(3)
P 		174
C 21.1
(-3)
P 		22.9
(-2.9)
P 		25.4
(-2.8)
P 		27
(-2.8)
P 		91.6
(-0.4)
P 		184
(3)
P 		163
avr 16.1
(-3) 		17.8
(-2.9) 		22.6
(-2.7) 		40.2
(-2) 		86.4
(-0.2) 		165.7
(3) 		150
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 188222_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1353
Sequence Type Exemplar sequence
Representative Public ID W10D5.3C NCBI
Target Description W10D5.3C /REP_DB=WormBase Gene ID /WP=CE14784 /GEN=gei-17 /TR=Q94361 /GB=CAB02133.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026507(11), NM_001026508(11), NR_000051(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026507 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-17) (gei-17) mRNA, complete cds. 11/11 None
NM_001026508 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-17) (gei-17) mRNA, complete cds. 11/11 None
NR_000051 NCBI Caenorhabditis elegans gei-17, miscRNA. 11/11 A 
SNAP00000007419 ENSEMBL cdna:SNAP chromosome:CEL140:I:9109654:9110124:-1 11/11 None
W10D5.3f ENSEMBL cdna:known chromosome:CEL140:I:9108977:9116063:-1 gene:W10D5.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172733 6 2 NM_001026506 173623_s_at (11)
NM_001026507 173623_s_at (11), 188222_s_at (11)
NM_001026508 188222_s_at (11)
NM_060043 173623_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9109584-9115594(-) 98.28 100.0
Public Domain and Genome References
Ensembl W10D5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD98730 Hypothetical protein W10D5.3f [Caenorhabditis elegans] ref|NP_001021678.1| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
blast CAB02134 Hypothetical protein W10D5.3a [Caenorhabditis elegans] ref|NP_492442.1| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
blast CAB54321 Hypothetical protein W10D5.3d [Caenorhabditis elegans] ref|NP_492443.1| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
blast CAI79179 Hypothetical protein W10D5.3g [Caenorhabditis elegans] ref|NP_001021679.1| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
blast CAB02133 Hypothetical protein W10D5.3c [Caenorhabditis elegans] ref|NP_492444.2| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 0.0
blast CAI79179 Hypothetical protein W10D5.3g [Caenorhabditis elegans] ref|NP_001021679.1| GEX Interacting protein family member (gei-17) [Caenorhabditis elegans] 2.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR004181 EMBL-EBI Zn-finger, MIZ type 4.6E-43
Pfam IPR004181 EMBL-EBI Zn-finger, MIZ type 4.6E-43
Sequence
Target Sequence 
>C. ELEGANS:188222_S_AT
aacggtgacaccaataacatccaaccaccacgaattctttccatggctgaaatacaagca
aatgcatctcgacttttggtaaatggacacctgatgatcgatcactcaggagtcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGGTGACACCAATAACATCCAAC 340 139 2185 Antisense
GTGACACCAATAACATCCAACCACC 282 483 2189 Antisense
AACCACCACGAATTCTTTCCATGGC 700 147 2207 Antisense
ACCACGAATTCTTTCCATGGCTGAA 178 75 2211 Antisense
GAATTCTTTCCATGGCTGAAATACA 265 325 2216 Antisense
AATACAAGCAAATGCATCTCGACTT 489 171 2235 Antisense
AGCAAATGCATCTCGACTTTTGGTA 185 77 2241 Antisense
GCATCTCGACTTTTGGTAAATGGAC 322 307 2248 Antisense
GTAAATGGACACCTGATGATCGATC 427 461 2263 Antisense
GGACACCTGATGATCGATCACTCAG 54 527 2269 Antisense
TGATGATCGATCACTCAGGAGTCAC 257 567 2276 Antisense
Sequence Source Affymetrix Proprietary Database