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[188220_at]

Description C32E8.7 /REP_DB=WormBase Gene ID /WP=CE08531 /GEN=ric-19 /TR=P91124 /GB=AAB42329.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 23      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 71      6grp_total > 03      4grp_total > 04      6grp_cgc > 40      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 515
1 2 3 4 range
A 408.4
(-0.9)
P 		243.6
(-3)
P 		262.4
(-2.8)
P 		707.7
(3)
P 		464
B 301
(-1.7)
P 		192.4
(-3)
P 		250.7
(-2.3)
P 		691.8
(3)
P 		499
C 302
(-2)
P 		264.3
(-2.6)
P 		240.8
(-3)
P 		595.4
(3)
P 		355
avr 337.1
(-1.6) 		233.4
(-3) 		251.3
(-2.8) 		665
(3) 		432

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 424
(3)
P 		287.2
(-2.7)
P 		347.2
(-0.2)
P 		400.6
(2)
P 		360.4
(0.3)
P 		280.6
(-3)
P 		143
B 410.4
(1)
P 		403.1
(0.5)
P 		350.7
(-3)
P 		397.8
(0.2)
P 		379.2
(-1.1)
P 		439.3
(3)
P 		89
C 264.7
(-2.2)
P 		441.6
(3)
P 		326.1
(-0.4)
P 		334.9
(-0.1)
P 		237.4
(-3)
P 		284.4
(-1.6)
P 		204
avr 366.4
(1.7) 		377.3
(2.9) 		341.3
(-1.2) 		377.8
(3) 		325.7
(-3) 		334.8
(-2) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 148.7
(3)
P 		52.9
(-3)
P 		68.6
(-2)
P 		103.6
(0.2)
P 		96
B 96
(-0.1)
P 		47.5
(-3)
P 		58.1
(-2.4)
P 		147.4
(3)
P 		100
C 100
(2.9)
P 		76
(-3)
P 		83.9
(-1.1)
P 		100.4
(3)
P 		24
avr 114.9
(2.8) 		58.8
(-3) 		70.2
(-1.8) 		117.1
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 78.2
(-1.5)
P 		102.1
(2)
P 		75.6
(-1.9)
P 		101.6
(1.9)
P 		108.8
(3)
P 		68.3
(-3)
P 		41
B 142.8
(1.4)
P 		134.2
(0.7)
P 		85.1
(-3)
P 		105.4
(-1.5)
P 		154.1
(2.3)
P 		163.8
(3)
P 		79
C 98.1
(-0.3)
P 		134.7
(3)
P 		83
(-1.6)
P 		67.4
(-3)
P 		76.8
(-2.2)
P 		95.2
(-0.5)
P 		67
avr 106.4
(0.6) 		123.7
(3) 		81.2
(-3) 		91.5
(-1.5) 		113.2
(1.5) 		109.1
(0.9) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188220_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.212
Sequence Type Exemplar sequence
Representative Public ID C32E8.7 NCBI
Target Description C32E8.7 /REP_DB=WormBase Gene ID /WP=CE08531 /GEN=ric-19 /TR=P91124 /GB=AAB42329.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058815(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058815 NCBI Caenorhabditis elegans Resistance to Inhibitors of Cholinesterase family member (ric-19) (ric-19) mRNA, complete cds. 11/11 None
GENEFINDER00000040664 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3778134:3781394:-1 11/11 None
SNAP00000040648 ENSEMBL cdna:SNAP chromosome:CEL140:I:3778683:3781546:-1 9/11 None
C32E8.7 ENSEMBL cdna:known chromosome:CEL140:I:3778134:3781394:-1 gene:C32E8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3778133-3781394(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ric-19
Ensembl C32E8.7
Entrez Gene 191757 Entrez gene
WormBase CE39089 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1599015_X_AT similar to islet cell autoantigen 1 isoform 1 cfa
CANINE:1597782_AT similar to islet cell autoantigen 1 isoform 1 cfa
CANINE:1586814_AT similar to islet cell autoantigen 1 isoform 1 cfa
CANINE:1585407_AT similar to islet cell autoantigen 1 isoform 1 cfa
CANINE_2:CFA.15576.1.A1_AT similar to islet cell autoantigen 1 isoform 1 cfa
CANINE_2:CFAAFFX.4263.1.S1_AT similar to islet cell autoantigen 1 isoform 1 cfa
CANINE_2:CFAAFFX.4263.1.S1_S_AT similar to islet cell autoantigen 1 isoform 1 cfa
CANINE_2:CFAAFFX.4265.1.S1_S_AT similar to islet cell autoantigen 1 isoform 1 cfa
CANINE_2:CFAAFFX.4267.1.S1_S_AT similar to islet cell autoantigen 1 isoform 1 cfa
DROSOPHILA_2:1637654_AT dm
DROSGENOME1:152895_AT dm
CHICKEN:GGA.10973.1.S1_AT islet cell autoantigen 1, 69kDa gga
HG-U133_PLUS_2:210547_X_AT islet cell autoantigen 1, 69kDa hs
HG-U133A:210547_X_AT islet cell autoantigen 1, 69kDa hs
HG-U133A_2:210547_X_AT islet cell autoantigen 1, 69kDa hs
HG-U133A:204002_S_AT islet cell autoantigen 1, 69kDa hs
HG-U133_PLUS_2:204002_S_AT islet cell autoantigen 1, 69kDa hs
HG-U133A_2:204002_S_AT islet cell autoantigen 1, 69kDa hs
HG-U133_PLUS_2:211740_AT islet cell autoantigen 1, 69kDa hs
HG-U133A:211740_AT islet cell autoantigen 1, 69kDa hs
HG-U133A_2:211740_AT islet cell autoantigen 1, 69kDa hs
HG-U133_PLUS_2:207949_S_AT islet cell autoantigen 1, 69kDa hs
HG-U133A:207949_S_AT islet cell autoantigen 1, 69kDa hs
HG-FOCUS:207949_S_AT islet cell autoantigen 1, 69kDa hs
HG-U133A_2:207949_S_AT islet cell autoantigen 1, 69kDa hs
HUGENEFL:U26591_AT islet cell autoantigen 1, 69kDa hs
U133_X3P:G437366_3P_X_AT islet cell autoantigen 1, 69kDa hs
U133_X3P:G437366_3P_A_AT islet cell autoantigen 1, 69kDa hs
U133_X3P:G13543527_3P_AT islet cell autoantigen 1, 69kDa hs
U133_X3P:G12545394_3P_A_AT islet cell autoantigen 1, 69kDa hs
U133_X3P:HS.167927.4.A1_3P_AT islet cell autoantigen 1, 69kDa hs
HG-U133A_2:214191_AT islet cell autoantigen 1, 69kDa hs
HG-U133_PLUS_2:214191_AT islet cell autoantigen 1, 69kDa hs
HG-U133A:214191_AT islet cell autoantigen 1, 69kDa hs
HG-U95AV2:32633_AT islet cell autoantigen 1, 69kDa hs
HG-U95AV2:32634_S_AT islet cell autoantigen 1, 69kDa hs
HG-U95D:84080_AT Islet cell autoantigen 1, 69kDa hs
MOE430A:1417901_A_AT islet cell autoantigen 1 mm
MOUSE430A_2:1417901_A_AT islet cell autoantigen 1 mm
MOUSE430_2:1417901_A_AT islet cell autoantigen 1 mm
MU11KSUBA:U26460_S_AT islet cell autoantigen 1 mm
MG-U74AV2:98484_AT islet cell autoantigen 1 mm
MOE430A:1431644_A_AT islet cell autoantigen 1 mm
MOUSE430A_2:1431644_A_AT islet cell autoantigen 1 mm
MOUSE430_2:1431644_A_AT islet cell autoantigen 1 mm
MG-U74BV2:115245_AT Islet cell autoantigen 1, mRNA (cDNA clone MGC:5919 IMAGE:3487814) mm
RG-U34A:L20900_AT islet cell autoantigen 1 rn
RAE230A:1367787_AT islet cell autoantigen 1 rn
RAT230_2:1367787_AT islet cell autoantigen 1 rn
Protein Similarities
Method ID Description E-Value
blast AAB42329 Resistance to inhibitors of cholinesterase protein 19 [Caenorhabditis elegans] 0.0
blast NP_491216 Resistance to Inhibitors of Cholinesterase family member (ric-19) [Caenorhabditis elegans] sp|P91124|RIC19_CAEEL Resistance to inhibitors of cholinesterase protein 19 (ICA1 homolog) 0.0
blast CAE66662 Hypothetical protein CBG12000 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010504 EMBL-EBI Arfaptin-like 2.4E-115
Pfam IPR010504 EMBL-EBI Arfaptin-like 2.4E-115
Sequence
Target Sequence 
>C. ELEGANS:188220_AT
tcctatgttctgacccattaccaaaatgagctctacgaatattattcaaaaacttccaga
gctttcgagacattggctgaaaacatcaattgctataacaattacgattttgagattctg
agtcacctggccaccggaacaaaacccgaaagagagcgtaaatcagaaaaagaggaaagt
gcaaaaacgagtcaaccaagaggaaacgaagaagaactcaaaaaccttttatttggaaga
gaaagcccacaatttggtgaagaagaagttcaagatgaatcccgttctcaatgtgatagt
cctttaatagaagatgttgatgatgaaagaaggaaaactggagatctgttagatttagaa
tcagctgcttcaattgcatttccaattggtccacttgccactttatttgatacttcctct
ttcgtcccaccaattcttccaccgcctaaaccaaatgcagtgtccgatgacattttatcc
cttttcgatgggaataaggcaaatagctctggcaaggaggcttctgcaactactatggac
tggcaatctcttatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTATGTTCTGACCCATTACCAAA 462 591 676 Antisense
AACTTCCAGAGCTTTCGAGACATTG 25 139 726 Antisense
TTTGAGATTCTGAGTCACCTGGCCA 683 665 784 Antisense
GATGAATCCCGTTCTCAATGTGATA 407 411 949 Antisense
ATCAGCTGCTTCAATTGCATTTCCA 190 29 1035 Antisense
CAATTGGTCCACTTGCCACTTTATT 310 179 1058 Antisense
TGCCACTTTATTTGATACTTCCTCT 448 587 1071 Antisense
TTCCACCGCCTAAACCAAATGCAGT 86 699 1112 Antisense
GTCCGATGACATTTTATCCCTTTTC 110 477 1137 Antisense
AGGCTTCTGCAACTACTATGGACTG 215 51 1193 Antisense
CTATGGACTGGCAATCTCTTATCGA 82 225 1208 Antisense
Sequence Source Affymetrix Proprietary Database