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[188217_at]

Description Y80D3A.7 /REP_DB=WormBase Gene ID /WP=CE23110 /GEN=ptr-22 /TR=Q9U1R3 /GB=CAB60438.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 93      6grp_total > 77      4grp_total > 02      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2568
1 2 3 4 range
A 324.4
(-2.6)
P 		203.9
(-2.9)
P 		162.4
(-3)
P 		2420.9
(3)
P 		2259
B 354.8
(-2.6)
P 		263.6
(-2.8)
P 		183.1
(-3)
P 		2522.8
(3)
P 		2340
C 317.7
(-2.7)
P 		187.5
(-3)
P 		232.7
(-2.9)
P 		2729.9
(3)
P 		2542
avr 332.3
(-2.6) 		218.3
(-2.9) 		192.7
(-3) 		2557.9
(3) 		2365

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 772
1 2 3 4 5 6 range
A 173.1
(-2.7)
P 		133.6
(-3)
P 		190.9
(-2.6)
P 		226.7
(-2.3)
P 		340.5
(-1.4)
P 		905.6
(3)
P 		772
B 157.2
(-3)
P 		164.7
(-2.9)
P 		206.3
(-2.6)
P 		206.7
(-2.6)
P 		371.8
(-1.1)
P 		852.8
(3)
P 		696
C 193.3
(-2.8)
P 		167.6
(-3)
P 		218.3
(-2.6)
P 		264.6
(-2.2)
P 		368.2
(-1.3)
P 		858.7
(3)
P 		691
avr 174.5
(-2.8) 		155.3
(-3) 		205.2
(-2.6) 		232.7
(-2.4) 		360.2
(-1.3) 		872.4
(3) 		717
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 495
1 2 3 4 range
A 118.1
(-1.5)
P 		44.3
(-3)
P 		42.5
(-3)
P 		354.4
(3)
P 		312
B 113.1
(-2.1)
P 		65.1
(-2.7)
P 		42.4
(-3)
P 		537.6
(3)
P 		495
C 105.2
(-2.2)
P 		53.9
(-3)
P 		81.1
(-2.6)
P 		460.3
(3)
P 		406
avr 112.1
(-2.1) 		54.4
(-3) 		55.3
(-3) 		450.8
(3) 		396

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 31.9
(-3)
P 		47.5
(-2.5)
P 		41.6
(-2.7)
P 		57.5
(-2.2)
P 		102.8
(-0.7)
P 		220.5
(3)
P 		189
B 54.7
(-2.9)
P 		54.8
(-2.9)
P 		50.1
(-3)
P 		54.8
(-2.9)
P 		151.1
(-0.7)
P 		318
(3)
P 		268
C 71.6
(-2.5)
P 		51.1
(-3)
P 		55.6
(-2.9)
P 		53.2
(-2.9)
P 		119.1
(-1.3)
P 		287.4
(3)
P 		236
avr 52.7
(-2.9) 		51.1
(-2.9) 		49.1
(-3) 		55.2
(-2.8) 		124.3
(-1) 		275.3
(3) 		226
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188217_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14372
Sequence Type Exemplar sequence
Representative Public ID Y80D3A.7 NCBI
Target Description Y80D3A.7 /REP_DB=WormBase Gene ID /WP=CE23110 /GEN=ptr-22 /TR=Q9U1R3 /GB=CAB60438.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075289(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075289 NCBI Caenorhabditis elegans PaTched Related family member (ptr-22) (ptr-22) mRNA, complete cds. 11/11 None
GENEFINDER00000017381 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18921805:18933945:-1 11/11 None
Y80D3A.7 ENSEMBL cdna:known chromosome:CEL140:V:18921892:18933945:-1 gene:Y80D3A.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017349 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18921891-18933945(-) 98.76 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ptr-22
Ensembl Y80D3A.7
Entrez Gene 191753 Entrez gene
SwissProt Q9U1R3 EMBL-EBI
WormBase CE23110 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8158 hedgehog receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60438 Hypothetical protein Y80D3A.7 [Caenorhabditis elegans] ref|NP_507690.1| PaTched Related family member (ptr-22) [Caenorhabditis elegans] 0.0
blast CAE72980 Hypothetical protein CBG20322 [Caenorhabditis briggsae] 0.0
blast CAA21636 Hypothetical protein Y38F1A.3 [Caenorhabditis elegans] ref|NP_496761.2| PaTched Related family member (ptr-18) [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR003392 EMBL-EBI Patched family 1.6E-59
Pfam IPR003392 EMBL-EBI Patched family 3.9E-19
Pfam IPR003392 EMBL-EBI Patched family 4.7E-69
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507690.1 11 31-53,212-234,255-277,281-303,359-381,421-443,655-674,678-700,712-734,754-776,783-805
Y80D3A.7 11 31-53,212-234,255-277,281-303,359-381,421-443,655-674,678-700,712-734,754-776,783-805
GENEFINDER00000017381 11 31-53,212-234,255-277,281-303,359-381,421-443,655-674,678-700,712-734,754-776,783-805
Sequence
Target Sequence 
>C. ELEGANS:188217_AT
catgggtctaacttttattctcttcattccggacctcatctccattttttccgccgtttt
tgcacttttttccgtgaattttggagttttcggctttttgagcatttggggagtcggtat
ggatccagtttctactgcttcactgcttatgtcgattggattctctgtggatattagtgc
tcatatcagttatcactattatcaagttgataagccgaccgcccgtcaaaaattggagca
cgtgtactctcatatcggttggccaactcttcagggtggcctatcaacaatgttagcaat
gatgcctattgtcctggcaccgtcttatcttggaatggtgttcttgaagacagtcatcct
agtctgcacctttggcctaatccacgggcttatagttttgccggttttcctctcattctt
cacagaaatttccggattttgcagacgaaaaagtgtgaaaattgccgattcgccatcatc
at

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGGGTCTAACTTTTATTCTCTTC 620 209 2007 Antisense
ATGGATCCAGTTTCTACTGCTTCAC 504 51 2125 Antisense
TACTGCTTCACTGCTTATGTCGATT 240 647 2139 Antisense
GGATTCTCTGTGGATATTAGTGCTC 472 509 2164 Antisense
TGTACTCTCATATCGGTTGGCCAAC 536 559 2249 Antisense
AACTCTTCAGGGTGGCCTATCAACA 702 137 2271 Antisense
AATGATGCCTATTGTCCTGGCACCG 113 165 2304 Antisense
TGGCACCGTCTTATCTTGGAATGGT 463 545 2321 Antisense
GAAGACAGTCATCCTAGTCTGCACC 73 341 2352 Antisense
CTTTGGCCTAATCCACGGGCTTATA 197 13 2376 Antisense
AAAATTGCCGATTCGCCATCATCAT 53 135 2464 Antisense
Sequence Source Affymetrix Proprietary Database