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[188216_at]

Description F41F3.7_rc /REP_DB=WormBase Gene ID /WP=CE07221 /TR=Q20286 /GB=AAA97986.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_high1_10_10 > 70      4grp_high_8_8 > 37      6grp_total > 40      4grp_total > 42      6grp_cgc > 71      6grp_high1_sub > 04      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 50.2
(-3)
A 		63.8
(-0.4)
A 		58.6
(-1.4)
P 		81.9
(3)
P 		32
B 48.4
(-3)
P 		106.6
(3)
P 		89.7
(1.3)
A 		54.3
(-2.4)
A 		58
C 67.6
(-1.8)
A 		108.9
(3)
P 		56.9
(-3)
M 		87.3
(0.5)
A 		52
avr 55.4
(-3) 		93.1
(3) 		68.4
(-0.9) 		74.5
(0) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 87.6
(3)
P 		50.5
(-0.4)
M 		77.3
(2)
P 		23
(-3)
A 		42.3
(-1.2)
A 		48.9
(-0.6)
P 		65
B 49.1
(-1.2)
P 		55.1
(-0.3)
M 		75.4
(3)
P 		61.4
(0.7)
M 		58.7
(0.3)
P 		38.1
(-3)
A 		37
C 61.6
(-1.7)
A 		89.7
(0.7)
P 		46.5
(-3)
A 		116.9
(3)
P 		46.7
(-3)
A 		81.3
(-0)
P 		70
avr 66.1
(2.7) 		65.1
(2.3) 		66.4
(2.8) 		67.1
(3) 		49.2
(-3) 		56.1
(-0.7) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 18.3
(3)
A 		13.8
(-1.3)
A 		15.3
(0.1)
P 		12
(-3)
P 		6
B 15.4
(-1.4)
P 		26.3
(3)
P 		20.8
(0.8)
A 		11.6
(-3)
A 		15
C 22.4
(-0.2)
A 		31.3
(3)
P 		19.8
(-1.2)
M 		14.7
(-3)
A 		17
avr 18.7
(0.2) 		23.8
(3) 		18.6
(0.2) 		12.8
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 16.1
(2.1)
P 		18
(3)
M 		16.8
(2.4)
P 		5.8
(-3)
A 		12.8
(0.4)
A 		11.9
(0)
P 		12
B 17.1
(-1.2)
P 		18.3
(-0.4)
M 		18.3
(-0.4)
P 		16.3
(-1.7)
M 		23.8
(3)
P 		14.2
(-3)
A 		10
C 22.8
(1.2)
A 		27.4
(3)
P 		11.8
(-3)
A 		23.5
(1.5)
P 		15.1
(-1.7)
A 		27.2
(2.9)
P 		16
avr 18.7
(0.5) 		21.2
(3) 		15.6
(-2.6) 		15.2
(-3) 		17.2
(-1) 		17.8
(-0.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188216_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28158
Sequence Type Exemplar sequence
Representative Public ID F41F3.7 NCBI
Target Description F41F3.7_rc /REP_DB=WormBase Gene ID /WP=CE07221 /TR=Q20286 /GB=AAA97986.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F41F3.7
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F41F3.7 F41F3.7_rc /REP_DB=WormBase Gene ID /WP=CE07221 /TR=Q20286 /GB=AAA97986.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071855 11/11 Negative Strand Matching Probes A 
GENEFINDER00000023072 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4663611-4664919(+) 100.0 100.0
Public Domain and Genome References
Ensembl F41F3.7
Sequence
Target Sequence 
>C. ELEGANS:188216_AT
caagcatataaatcgactcccaaacaagaattatgcttatgaagagccaaatacgggctt
tgctcagagtgctgaacttgtatgtgaataatacatcaatcagaaatagagaatcttgaa
gcactgtttgaaaaaacatccgaatgtttttcctaattgacattgaagtttccttgcttc
tctgtccattcttgcccaaataaaaccttaaaatcttggaaaacgtaaaaagattcaaaa
taagtgctatcccaaggaacccaattgctccgaaaagcacgtcaaaactactgaatccat
tgtccgatgtttttttacagctagggtcttcatatgtagttgcaaatgtttcaaggcttg
tgtaaattctgcagcctccgtcaaaaagattgtagctttttgtcatagttgcatatactc
gattcaagtagatgagggagatacatgccgcagtgactttaatactgcaaagtttgtcat
aatagaacggggcgaacattgcaataaatcgattaattgcaactaaaatcgttagaacat
catttgccacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGCATATAAATCGACTCCCAAAC 614 185 21 Antisense
AATACGGGCTTTGCTCAGAGTGCTG 647 171 70 Antisense
CATCCGAATGTTTTTCCTAATTGAC 45 211 157 Antisense
ATTGAAGTTTCCTTGCTTCTCTGTC 273 5 182 Antisense
CTCTGTCCATTCTTGCCCAAATAAA 607 231 200 Antisense
ATCCCAAGGAACCCAATTGCTCCGA 499 35 269 Antisense
ACTACTGAATCCATTGTCCGATGTT 419 101 307 Antisense
TAAATTCTGCAGCCTCCGTCAAAAA 9 643 383 Antisense
GTAGCTTTTTGTCATAGTTGCATAT 154 457 412 Antisense
GGGAGATACATGCCGCAGTGACTTT 291 493 456 Antisense
ATCGTTAGAACATCATTTGCCACAT 317 35 548 Antisense
Sequence Source Affymetrix Proprietary Database