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[188212_at]

Description T20H4.1 /REP_DB=WormBase Gene ID /WP=CE00750 /GEN=osm-10 /TR=Q22622 /GB=AAA50658.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 02      4grp_high_8_8 > 25      6grp_total > 23      4grp_total > 39      6grp_cgc > 30      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 291.6
(3)
P 		112.2
(-2.7)
A 		102
(-3)
A 		176.1
(-0.7)
P 		190
B 285.3
(3)
P 		117.4
(-2.6)
P 		106.6
(-3)
P 		120.1
(-2.5)
P 		179
C 249.4
(3)
P 		149.8
(-0.6)
P 		82.1
(-3)
P 		180.4
(0.5)
P 		167
avr 275.4
(3) 		126.5
(-2) 		96.9
(-3) 		158.9
(-0.9) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 140.8
(2.9)
P 		143.2
(3)
P 		130.9
(2.3)
P 		93.9
(0.2)
P 		51.7
(-2.2)
A 		38.4
(-3)
A 		105
B 127.5
(2.9)
P 		111.5
(1)
P 		128.3
(3)
P 		116.6
(1.6)
P 		78.5
(-3)
P 		80.2
(-2.8)
P 		50
C 119.1
(3)
P 		111.6
(2.2)
P 		102.7
(1.4)
P 		76.1
(-1.3)
P 		59.2
(-3)
P 		81.6
(-0.8)
P 		60
avr 129.1
(3) 		122.1
(2.4) 		120.6
(2.2) 		95.5
(-0.1) 		63.1
(-3) 		66.7
(-2.7) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 106.2
(3)
P 		24.4
(-3)
A 		26.7
(-2.8)
A 		25.8
(-2.9)
P 		82
B 91
(3)
P 		29
(-2.6)
P 		24.7
(-3)
P 		25.6
(-2.9)
P 		66
C 82.6
(3)
P 		43.1
(-1.4)
P 		28.6
(-3)
P 		30.4
(-2.8)
P 		54
avr 93.3
(3) 		32.2
(-2.5) 		26.7
(-3) 		27.3
(-2.9) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 26
(-0.6)
P 		50.9
(3)
P 		28.5
(-0.2)
P 		23.8
(-0.9)
P 		15.6
(-2.1)
A 		9.3
(-3)
A 		42
B 44.4
(3)
P 		37.1
(-0)
P 		31.2
(-2.5)
P 		30.9
(-2.6)
P 		31.9
(-2.2)
P 		29.9
(-3)
P 		15
C 44.2
(3)
P 		34.1
(0.9)
P 		26.2
(-0.7)
P 		15.3
(-3)
P 		19.1
(-2.2)
P 		27.3
(-0.5)
P 		29
avr 38.2
(2.2) 		40.7
(3) 		28.6
(-0.9) 		23.3
(-2.6) 		22.2
(-3) 		22.2
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188212_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7628
Sequence Type Exemplar sequence
Representative Public ID T20H4.1 NCBI
Target Description T20H4.1 /REP_DB=WormBase Gene ID /WP=CE00750 /GEN=osm-10 /TR=Q22622 /GB=AAA50658.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066197(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066197 NCBI Caenorhabditis elegans OSMotic avoidance abnormal family member (osm-10) (osm-10) mRNA, complete cds. 11/11 None
SNAP00000008522 ENSEMBL cdna:SNAP chromosome:CEL140:III:7243287:7245352:1 10/11 None
GENEFINDER00000008526 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7243287:7245352:1 10/11 None
T20H4.1 ENSEMBL cdna:known chromosome:CEL140:III:7243229:7245635:1 gene:T20H4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7243284-7245350(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol osm-10
Ensembl T20H4.1
Entrez Gene 191740 Entrez gene
SwissProt Q22622 EMBL-EBI
WormBase CE00750 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA50658 Osmotic avoidance abnormal protein 10 [Caenorhabditis elegans] ref|NP_498598.1| OSMotic avoidance abnormal family member (osm-10) [Caenorhabditis elegans] 0.0
blast CAE56446 Hypothetical protein CBG24151 [Caenorhabditis briggsae] 1.0E-130
blast CAE56446 Hypothetical protein CBG24151 [Caenorhabditis briggsae] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 6.2E-22
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 6.2E-22
Sequence
Target Sequence 
>C. ELEGANS:188212_AT
gactgagctcattgcagagacttggctcgaaactcgtcgccaacaaacgtatcagaaata
cgtggaaaaaggtcttcaaacagatccatctgtcattcaattttattgtgaatctctgaa
aattgccgaaggtcttcgtttggaaaatccaagtattcaaaccaaatcattcttttcctt
gaatggagtcaatgctcttgaacagaaaaaagaagaagaagagaaaatgcaaccagtcat
ttcagtttcatctaacaaagttttcattagtccaaaaaaagagcaaaagtgtcagttgac
catcaaaaatgacggagaagtcaatgtagtgtatcagataagtatcatgaatgcggcaaa
ttatgtcatgtcaccaatctgtgcaatattgcttccaaaagaggaattgacacttaatat
cacaagaaagccgggaaagcttcttgaagaagagttcttccgtattgactacggtgttgc
tcctgaaggaatcattgatgcacgtgattcttctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTGAGCTCATTGCAGAGACTTGG 571 375 681 Antisense
AGAGACTTGGCTCGAAACTCGTCGC 155 67 696 Antisense
AACTCGTCGCCAACAAACGTATCAG 138 141 711 Antisense
AAAGGTCTTCAAACAGATCCATCTG 383 121 748 Antisense
CAGATCCATCTGTCATTCAATTTTA 619 205 761 Antisense
CAAACCAAATCATTCTTTTCCTTGA 633 191 838 Antisense
ACCAGTCATTTCAGTTTCATCTAAC 240 87 912 Antisense
ATGTCATGTCACCAATCTGTGCAAT 10 49 1043 Antisense
GAAGAGTTCTTCCGTATTGACTACG 380 337 1129 Antisense
TTGACTACGGTGTTGCTCCTGAAGG 260 699 1145 Antisense
CATTGATGCACGTGATTCTTCTGAT 74 217 1173 Antisense
Sequence Source Affymetrix Proprietary Database