[Home] | [Total List]

[188211_at]

Description Y47D3A.27 /REP_DB=WormBase Gene ID /WP=CE22028 /GEN=teg-1 /TR=Q9NAH3 /GB=CAB55087.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 14      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 67.9
(1.8)
P 		65.7
(1.4)
M 		39.5
(-3)
A 		74.9
(3)
A 		35
B 94.1
(3)
P 		15.2
(-3)
A 		40
(-1.1)
A 		44.2
(-0.8)
P 		79
C 73.7
(-0.6)
P 		21.8
(-3)
A 		51.2
(-1.6)
P 		150.2
(3)
P 		128
avr 78.6
(1.8) 		34.2
(-3) 		43.6
(-2) 		89.8
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 90
(3)
A 		39
(-1.2)
P 		66.5
(1)
P 		26.5
(-2.3)
A 		17.9
(-3)
A 		18.5
(-3)
A 		72
B 77.1
(3)
P 		71.6
(2.4)
P 		45
(-0.4)
P 		21
(-3)
A 		31.7
(-1.9)
A 		43.3
(-0.6)
P 		56
C 79.8
(3)
P 		22.4
(-2.7)
A 		21.4
(-2.8)
A 		44.2
(-0.5)
A 		19.3
(-3)
A 		46.5
(-0.3)
P 		61
avr 82.3
(3) 		44.3
(-0.8) 		44.3
(-0.8) 		30.6
(-2.2) 		23
(-3) 		36.1
(-1.7) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 24.7
(3)
P 		14.3
(-1.3)
M 		10.3
(-3)
A 		11
(-2.7)
A 		14
B 30
(3)
P 		3.8
(-3)
A 		9.3
(-1.7)
A 		9.4
(-1.7)
P 		26
C 24.4
(2.7)
P 		6.3
(-3)
A 		17.8
(0.6)
P 		25.3
(3)
P 		19
avr 26.4
(3) 		8.1
(-3) 		12.5
(-1.6) 		15.2
(-0.7) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 16.6
(3)
A 		13.9
(1.7)
P 		14.5
(2)
P 		6.7
(-1.9)
A 		5.4
(-2.6)
A 		4.5
(-3)
A 		12
B 26.8
(3)
P 		23.8
(2.2)
P 		10.9
(-1.5)
P 		5.6
(-3)
A 		12.9
(-0.9)
A 		16.1
(-0)
P 		21
C 29.6
(3)
P 		6.8
(-2.7)
A 		5.4
(-3)
A 		8.9
(-2.1)
A 		6.2
(-2.8)
A 		15.6
(-0.5)
P 		24
avr 24.3
(3) 		14.8
(-0.3) 		10.3
(-1.9) 		7.1
(-3) 		8.2
(-2.6) 		12.1
(-1.3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188211_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7886
Sequence Type Exemplar sequence
Representative Public ID Y47D3A.27 NCBI
Target Description Y47D3A.27 /REP_DB=WormBase Gene ID /WP=CE22028 /GEN=teg-1 /TR=Q9NAH3 /GB=CAB55087.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067054(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067054 NCBI Caenorhabditis elegans Tumorous Enhancer of Glp-1(gf) family member (teg-1) (teg-1) mRNA, complete cds. 11/11 None
SNAP00000007221 ENSEMBL cdna:SNAP chromosome:CEL140:III:11312574:11316925:-1 11/11 None
GENEFINDER00000007299 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11312574:11316925:-1 11/11 None
Y47D3A.27 ENSEMBL cdna:known chromosome:CEL140:III:11312137:11316932:-1 gene:Y47D3A.27 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11312569-11316921(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol teg-1
Ensembl Y47D3A.27
Entrez Gene 176561 Entrez gene
SwissProt Q9NAH3 EMBL-EBI
WormBase CE22028 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.21313.1.S1_S_AT similar to CD2 antigen (cytoplasmic tail) binding protein 2 cfa
DROSOPHILA_2:1635365_AT dm
DROSGENOME1:152523_AT dm
HG-U133A:202257_S_AT CD2 antigen (cytoplasmic tail) binding protein 2 hs
HG-U133_PLUS_2:202257_S_AT CD2 antigen (cytoplasmic tail) binding protein 2 hs
HG-U133A_2:202257_S_AT CD2 antigen (cytoplasmic tail) binding protein 2 hs
HU35KSUBB:RC_R50380_AT CD2 antigen (cytoplasmic tail) binding protein 2 hs
HU35KSUBC:RC_AA454095_AT CD2 antigen (cytoplasmic tail) binding protein 2 hs
U133_X3P:G5174408_3P_A_AT CD2 antigen (cytoplasmic tail) binding protein 2 hs
U133_X3P:HS.202677.0.S2_3P_AT CD2 antigen (cytoplasmic tail) binding protein 2 hs
HG-U133A_2:202256_AT CD2 antigen (cytoplasmic tail) binding protein 2 hs
HG-FOCUS:202256_AT CD2 antigen (cytoplasmic tail) binding protein 2 hs
HG-U133_PLUS_2:202256_AT CD2 antigen (cytoplasmic tail) binding protein 2 hs
HG-U133A:202256_AT CD2 antigen (cytoplasmic tail) binding protein 2 hs
HG-U95AV2:33801_AT CD2 antigen (cytoplasmic tail) binding protein 2 hs
HG-U95B:52454_AT CD2 antigen (cytoplasmic tail) binding protein 2 hs
HG-U95E:78483_AT CD2 antigen (cytoplasmic tail) binding protein 2 hs
MU11KSUBA:AA733868_G_AT CD2 antigen (cytoplasmic tail) binding protein 2 mm
MU11KSUBA:AA733868_AT CD2 antigen (cytoplasmic tail) binding protein 2 mm
MG-U74AV2:162099_F_AT CD2 antigen (cytoplasmic tail) binding protein 2 mm
MG-U74AV2:160766_AT CD2 antigen (cytoplasmic tail) binding protein 2 mm
MG-U74CV2:170408_AT CD2 antigen (cytoplasmic tail) binding protein 2 mm
MOE430A:1417223_AT CD2 antigen (cytoplasmic tail) binding protein 2 mm
MOUSE430A_2:1417223_AT CD2 antigen (cytoplasmic tail) binding protein 2 mm
MOUSE430_2:1417223_AT CD2 antigen (cytoplasmic tail) binding protein 2 mm
MOE430A:1417224_A_AT CD2 antigen (cytoplasmic tail) binding protein 2 mm
MOUSE430A_2:1417224_A_AT CD2 antigen (cytoplasmic tail) binding protein 2 mm
MOUSE430_2:1417224_A_AT CD2 antigen (cytoplasmic tail) binding protein 2 mm
MOE430A:1448624_AT CD2 antigen (cytoplasmic tail) binding protein 2 mm
MOUSE430A_2:1448624_AT CD2 antigen (cytoplasmic tail) binding protein 2 mm
MOUSE430_2:1448624_AT CD2 antigen (cytoplasmic tail) binding protein 2 mm
MG-U74BV2:109163_F_AT CD2 antigen (cytoplasmic tail) binding protein 2 (Cd2bp2), mRNA mm
MG-U74BV2:109164_R_AT CD2 antigen (cytoplasmic tail) binding protein 2 (Cd2bp2), mRNA mm
MU19KSUBA:TC15033_AT CD2 antigen (cytoplasmic tail) binding protein 2 (Cd2bp2), mRNA mm
MU19KSUBA:TC25614_AT CD2 antigen (cytoplasmic tail) binding protein 2 (Cd2bp2), mRNA mm
MU19KSUBB:TC31225_AT CD2 antigen (cytoplasmic tail) binding protein 2 (Cd2bp2), mRNA mm
RG-U34C:RC_AI180337_AT CD2 antigen (cytoplasmic tail) binding protein 2 (predicted) rn
RAE230A:1372036_AT CD2 antigen (cytoplasmic tail) binding protein 2 (predicted) rn
RAT230_2:1372036_AT CD2 antigen (cytoplasmic tail) binding protein 2 (predicted) rn
RAE230B:1385676_AT CD2 antigen (cytoplasmic tail) binding protein 2 (predicted) rn
RAT230_2:1385676_AT CD2 antigen (cytoplasmic tail) binding protein 2 (predicted) rn
RAE230B:1395530_AT CD2 antigen (cytoplasmic tail) binding protein 2 (predicted) rn
RAT230_2:1395530_AT CD2 antigen (cytoplasmic tail) binding protein 2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB55087 Hypothetical protein Y47D3A.27 [Caenorhabditis elegans] ref|NP_499455.1| Tumorous Enhancer of Glp-1(gf) family member (teg-1) [Caenorhabditis elegans] 0.0
blast CAE67645 Hypothetical protein CBG13204 [Caenorhabditis briggsae] 1.0E-158
blast CAE67645 Hypothetical protein CBG13204 [Caenorhabditis briggsae] 1.0E-155
blast CAF88122 unnamed protein product [Tetraodon nigroviridis] 1.0E-34
blast CAF88122 unnamed protein product [Tetraodon nigroviridis] 6.0E-33
Sequence
Target Sequence 
>C. ELEGANS:188211_AT
ttcgagcaacttgtcaacctcctgaaacccaatcaaacagtggctaaagctctttcagag
ctcaaaaagaagaaaggattaagtgctgctgaagaacggaaacttcgttgggccgccaaa
aaagccggaaaatcatttgagccaactgatgggcagaaggaaacttcacagctctctggg
ctcgctgatgaactcatttctgctggaattatggacgcctacgaatggcatcgtgagaaa
ttcaatttccaattgcaaaaaatgataagtacagccgctgatgagttggatatgttctct
gatgagccaacttcaactggagcagcaagagcagcaggagctccaatggagcaagaagaa
gaagaagcagatgatagtgttaaatgggaatataaggctaatgaagaggcgaaaattgag
gtagaatacgaaaaaacggacgattttggcgaaattcgtgttaacaaaataggcccgatt
ccgacttcagaaatgatggatcgccaatcaaaaggacttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGAGCAACTTGTCAACCTCCTGA 458 695 520 Antisense
ACCTCCTGAAACCCAATCAAACAGT 371 83 536 Antisense
ACAGTGGCTAAAGCTCTTTCAGAGC 113 107 556 Antisense
AGAAGGAAACTTCACAGCTCTCTGG 480 73 674 Antisense
GGCTCGCTGATGAACTCATTTCTGC 624 539 698 Antisense
GGACGCCTACGAATGGCATCGTGAG 355 523 732 Antisense
GTACAGCCGCTGATGAGTTGGATAT 364 461 788 Antisense
AGTTGGATATGTTCTCTGATGAGCC 541 65 803 Antisense
TGAGCCAACTTCAACTGGAGCAGCA 73 569 822 Antisense
GCCCGATTCCGACTTCAGAAATGAT 264 287 992 Antisense
GGATCGCCAATCAAAAGGACTTCTT 411 513 1017 Antisense
Sequence Source Affymetrix Proprietary Database