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[188210_at] 7TM chemoreceptor, srj family

Description C03G6.3 /REP_DB=WormBase Gene ID /WP=CE07877 /GEN=srj-14 /TR=O01456 /GB=AAB52303.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 19      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 24.1
(-3)
A 		49.1
(-1.7)
A 		69
(-0.6)
A 		136.7
(3)
A 		113
B 51.5
(-0.8)
A 		99
(2)
A 		13.3
(-3)
A 		115.6
(3)
A 		102
C 110.4
(1.8)
A 		76.4
(-0.5)
A 		38.8
(-3)
A 		127.6
(3)
A 		89
avr 62
(-1.5) 		74.8
(-0.6) 		40.4
(-3) 		126.6
(3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 56.7
(-2.1)
A 		91.1
(-0.2)
A 		148.5
(3)
A 		90.2
(-0.2)
A 		40.3
(-3)
A 		59.8
(-1.9)
A 		108
B 95.1
(1.3)
A 		115.1
(3)
A 		44.4
(-3)
A 		76.7
(-0.3)
P 		97.4
(1.5)
P 		58
(-1.8)
A 		71
C 78.8
(-0.2)
A 		88.2
(0.5)
A 		90.2
(0.6)
M 		123.3
(3)
A 		39.3
(-3)
A 		44.3
(-2.6)
A 		84
avr 76.9
(0.1) 		98.1
(3) 		94.4
(2.5) 		96.7
(2.8) 		59
(-2.3) 		54
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 8.8
(-3)
A 		10.7
(-2)
A 		18
(1.9)
A 		20
(3)
A 		11
B 16.4
(0.7)
A 		24.4
(2.9)
A 		3.1
(-3)
A 		24.6
(3)
A 		22
C 36.5
(3)
A 		22
(-0.8)
A 		13.5
(-3)
A 		21.5
(-0.9)
A 		23
avr 20.6
(2.2) 		19
(1.3) 		11.5
(-3) 		22
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 10.5
(-3)
A 		32.4
(3)
A 		32.3
(3)
A 		22.9
(0.4)
A 		12.2
(-2.5)
A 		14.5
(-1.9)
A 		22
B 33.1
(1.6)
A 		38.3
(2.7)
A 		10.8
(-3)
A 		20.3
(-1)
P 		39.6
(3)
P 		21.6
(-0.8)
A 		29
C 29.2
(3)
A 		26.9
(2.2)
A 		23
(0.7)
M 		24.8
(1.4)
A 		12.7
(-3)
A 		14.8
(-2.2)
A 		17
avr 24.3
(-0.2) 		32.5
(3) 		22
(-1.1) 		22.7
(-0.8) 		21.5
(-1.3) 		17
(-3) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188210_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12267
Sequence Type Exemplar sequence
Representative Public ID C03G6.3 NCBI
Target Description C03G6.3 /REP_DB=WormBase Gene ID /WP=CE07877 /GEN=srj-14 /TR=O01456 /GB=AAB52303.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072483(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072483 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-14) (srj-14) mRNA, complete cds. 11/11 None
SNAP00000031559 ENSEMBL cdna:SNAP chromosome:CEL140:V:7372747:7374677:1 9/11 None
GENEFINDER00000031574 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7371033:7374677:1 11/11 None
C03G6.3 ENSEMBL cdna:known chromosome:CEL140:V:7373426:7374704:1 gene:C03G6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7373426-7374678(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srj family
Gene Symbol srj-14
Ensembl C03G6.3
Entrez Gene 179124 Entrez gene
SwissProt O01456 EMBL-EBI
WormBase CE07877 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52303 Serpentine receptor, class j protein 14 [Caenorhabditis elegans] ref|NP_504884.1| Serpentine Receptor, class J family member (srj-14) [Caenorhabditis elegans] 0.0
blast NP_504896 Serpentine Receptor, class J family member (srj-13) [Caenorhabditis elegans] gb|AAK72300.1| Serpentine receptor, class j protein 13 [Caenorhabditis elegans] 1.0E-138
blast AAB52303 Serpentine receptor, class j protein 14 [Caenorhabditis elegans] ref|NP_504884.1| Serpentine Receptor, class J family member (srj-14) [Caenorhabditis elegans] 1.0E-132
blast CAE74619 Hypothetical protein CBG22410 [Caenorhabditis briggsae] 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.5E-6
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.5E-6
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 2.2E-19
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504884.1 7 10-30,43-65,94-116,129-151,200-222,248-270,285-307
C03G6.3 7 10-30,43-65,94-116,129-151,200-222,248-270,285-307
SNAP00000031559 4 63-85,100-122,184-206,221-243
GENEFINDER00000031574 7 39-61,74-96,124-146,159-181,230-252,278-300,315-337
Sequence
Target Sequence 
>C. ELEGANS:188210_AT
tgcatgatgacatttttcctggcccacggagttgcatggactgccgtttgcgagctgtgt
ctgtacgcaaatgatgaaatcagggactacattcgaacgactttcagagatgagtatgac
gtcgactcatatgacattgctttcgtggctgcactttacattgatggaagcaatgaaaca
aaaaacaaaagttgggctgggatctttcttcttttcagcatttcttcgttcgctgtttcg
ttttatttaattctgggaagaaagatcgttgtcaaactgagaactcatactgcactctct
caacaaactcgaaacatgcacaggcagctcttcctagttttggcatttcaaacaatcatc
ccagtttgcatctgtttttctccttgtatgatggcgtggattggcccaatgttctacttg
gattttggaatgtgggacaactactttggggtcatcgcgttttcagctttcccattcttg
gaccctcttgctataatctgcctgcttccgaactacagaactcgtataaccggtgcatcc
gttttcacat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCATGATGACATTTTTCCTGGCCC 117 579 421 Antisense
GCCCACGGAGTTGCATGGACTGCCG 455 285 442 Antisense
ATGACATTGCTTTCGTGGCTGCACT 707 43 551 Antisense
TTCTTTTCAGCATTTCTTCGTTCGC 30 691 629 Antisense
TCTTCGTTCGCTGTTTCGTTTTATT 248 617 643 Antisense
TGCACTCTCTCAACAAACTCGAAAC 584 577 711 Antisense
GAAACATGCACAGGCAGCTCTTCCT 597 355 731 Antisense
AGCTCTTCCTAGTTTTGGCATTTCA 193 79 746 Antisense
TGCATCTGTTTTTCTCCTTGTATGA 229 579 787 Antisense
ATCTGCCTGCTTCCGAACTACAGAA 31 35 916 Antisense
ATAACCGGTGCATCCGTTTTCACAT 579 23 946 Antisense
Sequence Source Affymetrix Proprietary Database