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[188209_at]

Description Y53H1B.4_rc /REP_DB=WormBase Gene ID /WP=CE22435 /TR=Q9U249 /GB=CAB60412.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /REVCOMP
Cluster 6grp_total > 79      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 45
(-0.1)
A 		34.1
(-1.2)
A 		14.9
(-3)
A 		78.1
(3)
A 		63
B 17.4
(-1.6)
A 		57.2
(2.7)
A 		59.8
(3)
A 		4.2
(-3)
A 		56
C 16.7
(-1.4)
A 		27
(3)
A 		18.8
(-0.5)
A 		13
(-3)
A 		14
avr 26.4
(-3) 		39.4
(3) 		31.2
(-0.8) 		31.8
(-0.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 19.6
(-2)
A 		15.1
(-3)
A 		34.2
(1.3)
A 		41.5
(3)
A 		18.6
(-2.2)
A 		27.9
(-0.1)
A 		26
B 20.6
(0.1)
A 		15.3
(-0.9)
A 		3.9
(-3)
A 		8.6
(-2.1)
A 		20.3
(0.1)
A 		35.9
(3)
M 		32
C 25.4
(-0.3)
A 		35.9
(1.2)
A 		5.1
(-3)
A 		8.7
(-2.5)
A 		48.5
(2.9)
A 		49.6
(3)
A 		45
avr 21.9
(-1.1) 		22.1
(-1) 		14.4
(-3) 		19.6
(-1.7) 		29.1
(0.8) 		37.8
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.4
(3)
A 		7.4
(-1.3)
A 		3.9
(-3)
A 		11.4
(0.6)
A 		13
B 5.5
(-0.9)
A 		14.1
(3)
A 		13.9
(2.9)
A 		0.9
(-3)
A 		13
C 5.5
(0.5)
A 		7.8
(3)
A 		6.6
(1.7)
A 		2.2
(-3)
A 		6
avr 9.1
(2.2) 		9.8
(3) 		8.1
(1) 		4.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.6
(-3)
A 		5.4
(-1.4)
A 		7.4
(0.3)
A 		10.5
(3)
A 		5.6
(-1.3)
A 		6.8
(-0.2)
A 		7
B 7.2
(0)
A 		5.1
(-1)
A 		0.9
(-3)
A 		2.3
(-2.3)
A 		8.3
(0.6)
A 		13.4
(3)
M 		13
C 9.4
(0.2)
A 		10.9
(0.8)
A 		1.3
(-3)
A 		1.8
(-2.8)
A 		15.7
(2.6)
A 		16.6
(3)
A 		15
avr 6.7
(-0.7) 		7.1
(-0.4) 		3.2
(-3) 		4.9
(-1.9) 		9.9
(1.4) 		12.3
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188209_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28104
Sequence Type Exemplar sequence
Representative Public ID Y53H1B.4 NCBI
Target Description Y53H1B.4_rc /REP_DB=WormBase Gene ID /WP=CE22435 /TR=Q9U249 /GB=CAB60412.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /REVCOMP
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y53H1B.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y53H1B.4 Y53H1B.4_rc /REP_DB=WormBase Gene ID /WP=CE22435 /TR=Q9U249 /GB=CAB60412.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /REVCOMP A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_060501 11/11 Negative Strand Matching Probes A 
GENEFINDER00000041762 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11308797-11309717(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y53H1B.4
Sequence
Target Sequence 
>C. ELEGANS:188209_AT
tgcgcccgtttctgagattacgtccagtgcggcaatcttgttgtaggtcaagccaataaa
acggagcaaatgcaaaacgggatacggtgtactccagtttaacattacatttcgtcttcc
aatattcacaataaaatccacccacaatgtgccgggactttggagagattgtctcaaatt
gtaagaaacattggctgatctcgtacccggtctcatcttgacttcctttgacactgacaa
acctattcatatgattttcaaccatgaacatgataccatgattactcgaaaattcccaag
tatagaatatcaattgctcattttcaaacttctcggcttttccatacttgacaaaagctt
catgtagactatttgtgtagaactctcttggtttggggacaaaatcaaatttcatatggt
tcatcttggtagggcttcgaattacacagtctagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGCCCGTTTCTGAGATTACGTCC 297 543 18 Antisense
ACGTCCAGTGCGGCAATCTTGTTGT 567 95 37 Antisense
GATACGGTGTACTCCAGTTTAACAT 615 379 98 Antisense
TACATTTCGTCTTCCAATATTCACA 328 645 123 Antisense
AAAATCCACCCACAATGTGCCGGGA 699 131 150 Antisense
AGAAACATTGGCTGATCTCGTACCC 589 71 201 Antisense
TCATCTTGACTTCCTTTGACACTGA 660 619 230 Antisense
TTCTCGGCTTTTCCATACTTGACAA 632 689 347 Antisense
GTAGAACTCTCTTGGTTTGGGGACA 600 453 394 Antisense
ATGGTTCATCTTGGTAGGGCTTCGA 343 51 433 Antisense
GGGCTTCGAATTACACAGTCTAGAC 492 493 449 Antisense
Sequence Source Affymetrix Proprietary Database