[Home] | [Total List]

[188208_at] EF hand

Description T12D8.6 /REP_DB=WormBase Gene ID /WP=CE16403 /TR=Q9XVI9 /GB=CAB03346.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=EF hand
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 56      6grp_total > 61      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1502
1 2 3 4 range
A 2083.7
(0.6)
P 		2219.4
(1.3)
P 		2566.8
(3)
P 		1355
(-3)
P 		1212
B 2133.1
(0.8)
P 		2119.8
(0.7)
P 		2630.7
(3)
P 		1297.1
(-3)
P 		1334
C 1996.5
(1.6)
P 		2020.4
(1.7)
P 		2269.8
(3)
P 		1129
(-3)
P 		1141
avr 2071.1
(1) 		2119.9
(1.2) 		2489.1
(3) 		1260.4
(-3) 		1229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1136
1 2 3 4 5 6 range
A 1899.3
(-0.8)
P 		1585.3
(-3)
P 		2430.4
(3)
P 		2329.8
(2.3)
P 		2028.9
(0.1)
P 		1786.4
(-1.6)
P 		845
B 1985
(-1.1)
P 		1649.8
(-3)
P 		2721.7
(3)
P 		2284.6
(0.6)
P 		1963.7
(-1.2)
P 		1928.1
(-1.4)
P 		1072
C 1699.1
(-3)
P 		1779.4
(-2.5)
P 		1874.3
(-1.8)
P 		2608.1
(3)
P 		1809.6
(-2.3)
P 		2060.2
(-0.6)
P 		909
avr 1861.1
(-1.5) 		1671.5
(-3) 		2342.1
(2.5) 		2407.5
(3) 		1934.1
(-0.9) 		1924.9
(-0.9) 		736
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 601
1 2 3 4 range
A 758.7
(3)
P 		481.8
(0)
P 		671
(2.1)
P 		198.3
(-3)
P 		560
B 680.2
(3)
P 		523.5
(0.7)
P 		609.6
(2)
P 		276.4
(-3)
P 		404
C 660.9
(1.7)
P 		580.9
(0.9)
P 		791.1
(3)
P 		190.4
(-3)
P 		601
avr 699.9
(3) 		528.7
(0.9) 		690.6
(2.9) 		221.7
(-3) 		478

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 448
1 2 3 4 5 6 range
A 350.1
(-3)
P 		563.8
(1.9)
P 		529.3
(1.1)
P 		590.9
(2.5)
P 		612.2
(3)
P 		434.9
(-1.1)
P 		262
B 690.7
(0.4)
P 		549.2
(-3)
P 		660.9
(-0.3)
P 		605.1
(-1.7)
P 		797.8
(3)
P 		719
(1.1)
P 		249
C 629.8
(1.3)
P 		542.9
(-1.1)
P 		477
(-3)
P 		524.5
(-1.7)
P 		585.5
(0.1)
P 		689.7
(3)
P 		213
avr 556.9
(-2.7) 		552
(-3) 		555.7
(-2.8) 		573.5
(-1.9) 		665.2
(3) 		614.5
(0.3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 188208_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8094
Sequence Type Exemplar sequence
Representative Public ID T12D8.6 NCBI
Target Description T12D8.6 /REP_DB=WormBase Gene ID /WP=CE16403 /TR=Q9XVI9 /GB=CAB03346.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=EF hand
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067412(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067412 NCBI Caenorhabditis elegans T12D8.6 (T12D8.6) mRNA, complete cds. 11/11 None
SNAP00000041263 ENSEMBL cdna:SNAP chromosome:CEL140:III:13622839:13623480:1 11/11 None
GENEFINDER00000041274 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13622839:13623480:1 11/11 None
T12D8.6 ENSEMBL cdna:known chromosome:CEL140:III:13622830:13623688:1 gene:T12D8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13622834-13623476(+) 100.0 100.0
Public Domain and Genome References
Gene Title EF hand
Ensembl T12D8.6
Entrez Gene 176796 Entrez gene
SwissProt Q9XVI9 EMBL-EBI
WormBase CE16403 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1596033_S_AT similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle cfa
CANINE:1585424_X_AT similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle cfa
CANINE:1585044_X_AT similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle cfa
CANINE:1584910_X_AT similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle cfa
CANINE:1584351_X_AT similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle cfa
CANINE:1584559_X_AT similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle cfa
CANINE:1584009_X_AT similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle cfa
CANINE:1584327_X_AT similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle cfa
CANINE:1584326_AT similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle cfa
CANINE:1583552_X_AT similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle cfa
CANINE:1583114_X_AT similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle cfa
CANINE:1583373_X_AT similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle cfa
CANINE_2:CFA.14635.1.A1_X_AT similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle cfa
CANINE_2:CFA.4389.1.A1_S_AT similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle cfa
CANINE_2:CFAAFFX.1138.1.S1_X_AT similar to myosin, light polypeptide 6, alkali, smooth muscle and non-muscle cfa
DROSOPHILA_2:1631832_AT Myosin light chain cytoplasmic dm
DROSGENOME1:141495_AT Myosin light chain cytoplasmic dm
HG-U133_PLUS_2:214002_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
HG-U133A_2:214002_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
HG-U133A:214002_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
HG-U95AV2:33993_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
HG-U133A:212082_S_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
HG-U133_PLUS_2:212082_S_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
HG-U133A_2:212082_S_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
HG-FOCUS:212082_S_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
HUGENEFL:M22919_RNA2_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
U133_X3P:HS.77385.3.S1_3P_X_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
U133_X3P:HS.77385.3.S1_3P_A_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
U133_X3P:HS.77385.2.S1_3P_X_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
U133_X3P:HS.77385.2.S1_3P_A_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
HG-U95AV2:33994_G_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
HG-U95E:89570_F_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
HG-U95E:89572_F_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
HG-U133_PLUS_2:241662_X_AT Myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
HG-U133B:241662_X_AT Myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
HG-U133_PLUS_2:241664_X_AT Myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
HG-U133B:241664_X_AT Myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
HG-U95E:85418_AT Myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
U133_X3P:HS.313518.0.A1_3P_X_AT Myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
U133_X3P:HS.313518.0.S1_3P_X_AT Myosin, light polypeptide 6, alkali, smooth muscle and non-muscle hs
MG-U74BV2:105173_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle mm
MOE430A:1434396_A_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle mm
MOUSE430A_2:1434396_A_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle mm
MOUSE430_2:1434396_A_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle mm
MU11KSUBA:U04443_F_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle mm
MU11KSUBB:MSA.8904.0_F_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle mm
MU11KSUBB:MSA.32174.0_F_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle mm
MOE430A:1424269_A_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle mm
MOUSE430A_2:1424269_A_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle mm
MOUSE430_2:1424269_A_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle mm
MOE430A:1435041_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle mm
MOUSE430A_2:1435041_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle mm
MOUSE430_2:1435041_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle mm
MG-U74AV2:97542_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle mm
MU19KSUBC:TC40126_I_AT Myosin, light polypeptide 6, alkali, smooth muscle and non-muscle, mRNA (cDNA clone MGC:25573 IMAGE:3990090) mm
MU19KSUBC:TC40126_S_AT Myosin, light polypeptide 6, alkali, smooth muscle and non-muscle, mRNA (cDNA clone MGC:25573 IMAGE:3990090) mm
RG-U34A:RC_AA875523_I_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle (predicted) rn
RG-U34A:RC_AA875523_S_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle (predicted) rn
RG-U34A:RC_AA894200_G_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle (predicted) rn
RG-U34A:S77858_S_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle (predicted) rn
RG-U34A:RC_AA894200_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle (predicted) rn
RG-U34C:RC_AI230721_I_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle (predicted) rn
RAE230A:1371304_A_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle (predicted) rn
RAT230_2:1371304_A_AT myosin, light polypeptide 6, alkali, smooth muscle and non-muscle (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03346 Hypothetical protein T12D8.6 [Caenorhabditis elegans] ref|NP_499813.1| T12D8.6 [Caenorhabditis elegans] 7.0E-77
blast CAE71349 Hypothetical protein CBG18252 [Caenorhabditis briggsae] 7.0E-76
blast AAB47548 similar to nonmuscle myosin essential light chain encoded by GenBank Accession Number U25057 [Toxocara canis] 6.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0015
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 8.2E-5
Sequence
Target Sequence 
>C. ELEGANS:188208_AT
ggttttcgcctattttgacagcaaaggcgacgagcgaatctctgttcagcaggtcggtga
tgtgctccgcgcgctcggccagaacccaacagaagccgaaattcacaaatgtgtcggctc
gttcgatcgggaagctcggctttcattcgaggactttgtcccaattttccagtcggtgtc
caagaatcgtgaaaagcacaccgttgaggagttcgtcgaggggttgtcgcatttcgacaa
ggagggaaacggaatgatcaatgtcgcagagctccgacacttgctcaccactcttggaga
acgcctatccgatgaagacgtcgatcaattgctctccggacacaacgattctcacgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTTTCGCCTATTTTGACAGCAAA 639 505 39 Antisense
GGCGACGAGCGAATCTCTGTTCAGC 710 541 64 Antisense
TCAGCAGGTCGGTGATGTGCTCCGC 510 621 84 Antisense
GCTCGGCCAGAACCCAACAGAAGCC 641 299 111 Antisense
ACAAATGTGTCGGCTCGTTCGATCG 635 109 143 Antisense
CGGCTTTCATTCGAGGACTTTGTCC 482 241 175 Antisense
GACTTTGTCCCAATTTTCCAGTCGG 556 369 190 Antisense
AGCACACCGTTGAGGAGTTCGTCGA 84 65 233 Antisense
GTTCGTCGAGGGGTTGTCGCATTTC 349 439 249 Antisense
CTTGCTCACCACTCTTGGAGAACGC 506 217 318 Antisense
TCTCCGGACACAACGATTCTCACGG 366 611 371 Antisense
Sequence Source Affymetrix Proprietary Database